Alternatives and similar repositories for mouse-brain-atlas

Users that are interested in mouse-brain-atlas are comparing it to the libraries listed below

• Hierakonpolis / MU-Net
  Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI
  ☆22Updated 3 years ago
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆46Updated 4 years ago
• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆16Updated 3 years ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆28Updated last month
• dama-lab / multi-atlas-segmentation
  Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
  ☆37Updated 8 months ago
• volBrain / AssemblyNet
  AssemblyNet: 3D Whole Brain MRI segmentation pipeline
  ☆60Updated last year
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆107Updated 6 months ago
• yu02019 / BEN
  ☆29Updated last year
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆76Updated 2 weeks ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆73Updated last week
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆48Updated last month
• pBFSLab / FastCSR
  ☆28Updated last year
• thalamicseg / thomas_new
  Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…
  ☆23Updated 4 months ago
• OSIPI / DCE-DSC-MRI_CodeCollection
  TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.
  ☆39Updated 4 months ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• AICONSlab / SynthSegCSVD
  CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI
  ☆13Updated 2 months ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated 2 weeks ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆15Updated 2 years ago
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆25Updated 2 weeks ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆98Updated 10 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated 10 months ago
• WCHN / CTseg
  Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.
  ☆73Updated 11 months ago
• AICONSlab / HyperMapp3r
  AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs
  ☆17Updated 8 months ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆67Updated 2 years ago
• AICONSlab / MIRACL
  Multi-modal Image Registration And Connectivity anaLysis
  ☆45Updated 2 weeks ago
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated 3 months ago
• Haoyulance / WPSS
  Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter
  ☆14Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated last week
• MIC-DKFZ / radtract
  RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.
  ☆11Updated last year