Alternatives and similar repositories for mouse-brain-atlas

Users that are interested in mouse-brain-atlas are comparing it to the libraries listed below

• Hierakonpolis / MU-Net
  Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI
  ☆22Updated 3 years ago
• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆16Updated 3 years ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆107Updated 7 months ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆28Updated last week
• yu02019 / BEN
  ☆29Updated last year
• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆228Updated this week
• dama-lab / multi-atlas-segmentation
  Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
  ☆38Updated 9 months ago
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆46Updated 4 years ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆76Updated last month
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated this week
• ntustison / TemplateBuildingExample
  Just when I thought you couldn’t possibly be any dumber, you go and do something like this… and totally redeem yourself!
  ☆24Updated 5 months ago
• viswanath-lab / RadQy
  RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…
  ☆103Updated last month
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆73Updated this week
• Jfortin1 / neuroCombat
  Harmonization of multi-site imaging data with ComBat (Python)
  ☆143Updated 2 years ago
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆243Updated last year
• volBrain / AssemblyNet
  AssemblyNet: 3D Whole Brain MRI segmentation pipeline
  ☆61Updated 2 years ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆48Updated 2 months ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆16Updated 2 years ago
• BBillot / SynthSR
  A framework for joint super-resolution and image synthesis, without requiring real training data
  ☆171Updated last year
• BrkRaw / brkraw
  BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
  ☆47Updated last year
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated 11 months ago
• CCI-Bonn / HD-BET
  Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …
  ☆37Updated 4 years ago
• pBFSLab / FastCSR
  ☆28Updated last year
• npnl / ATLAS
  A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.
  ☆82Updated 2 years ago
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆103Updated this week
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆68Updated 2 years ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆143Updated last month
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆158Updated 2 months ago