dama-lab / mouse-brain-atlasLinks
Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
☆25Updated last year
Alternatives and similar repositories for mouse-brain-atlas
Users that are interested in mouse-brain-atlas are comparing it to the libraries listed below
Sorting:
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆22Updated 4 years ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆17Updated 4 years ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Updated last year
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆47Updated 4 years ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆108Updated 11 months ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆67Updated 2 years ago
- ☆30Updated last year
- Multi-modal Image Registration And Connectivity anaLysis☆46Updated this week
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆237Updated 2 weeks ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆77Updated this week
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆31Updated this week
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆34Updated this week
- Automatic White Matter Bundle Segmentation☆249Updated 2 years ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆173Updated last year
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆39Updated 2 months ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆79Updated last year
- White matter tractography clustering and more...☆80Updated 5 months ago
- This version is OBSOLETE. Please use http://github.com/thalamicseg/hipsthomasdocker which is the latest and maintained © Copyright Manoj…☆25Updated last month
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆53Updated last year
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆106Updated 3 months ago
- DICOM to NIfTI conversion, NIfTI tools☆102Updated 2 months ago
- High-throughput Python platform for image reconstruction and analysis☆49Updated 4 months ago
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆55Updated last week
- A Python package providing I/O interface for Bruker data sets☆29Updated last month
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆155Updated this week
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆70Updated 2 years ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- Multi-site dMRI harmonization☆49Updated 6 months ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆155Updated 3 years ago