Alternatives and similar repositories for mouse-brain-atlas

Users that are interested in mouse-brain-atlas are comparing it to the libraries listed below

• Hierakonpolis / MU-Net
  Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI
  ☆23Updated 4 years ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆113Updated last year
• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆18Updated 4 years ago
• dama-lab / masmat
  Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
  ☆40Updated last month
• OSIPI / DCE-DSC-MRI_CodeCollection
  TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.
  ☆40Updated 4 months ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆84Updated 2 weeks ago
• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)
  ☆240Updated 3 weeks ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆73Updated 2 years ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• viswanath-lab / RadQy
  RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…
  ☆109Updated 4 months ago
• volBrain / AssemblyNet
  AssemblyNet: 3D Whole Brain MRI segmentation pipeline
  ☆67Updated 2 years ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆79Updated 6 months ago
• delucaal / MRIToolkit
  ☆27Updated 10 months ago
• yu02019 / BEN
  ☆31Updated last year
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆47Updated 4 years ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆49Updated 7 months ago
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆249Updated 2 years ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆33Updated last week
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated last year
• thalamicseg / thomas_new
  This version is OBSOLETE. Please use http://github.com/thalamicseg/hipsthomasdocker which is the latest and maintained © Copyright Manoj…
  ☆25Updated 2 months ago
• BBillot / SynthSR
  A framework for joint super-resolution and image synthesis, without requiring real training data
  ☆178Updated last year
• gift-surg / NiftyMIC
  NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.
  ☆160Updated 3 years ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• AICONSlab / MIRACL
  Multi-modal Image Registration And Connectivity anaLysis
  ☆46Updated last week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆77Updated 2 weeks ago
• petmri / ROCKETSHIP
  Dynamic Contrast Enhanced (DCE) MRI Analysis Software
  ☆52Updated 2 months ago
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆38Updated last week
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆102Updated 2 weeks ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆17Updated 3 years ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆56Updated last week