dama-lab / mouse-brain-atlasLinks
Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
☆23Updated last year
Alternatives and similar repositories for mouse-brain-atlas
Users that are interested in mouse-brain-atlas are comparing it to the libraries listed below
Sorting:
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆22Updated 3 years ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆16Updated 3 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆27Updated last month
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆37Updated 8 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated 2 months ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆105Updated 6 months ago
- White matter tractography clustering and more...☆76Updated 2 months ago
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆53Updated 2 weeks ago
- Multi-site dMRI harmonization☆48Updated 3 weeks ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆52Updated last year
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆71Updated this week
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆64Updated 2 years ago
- dMRI based fiber tracking using parallel transport tractography☆25Updated 3 months ago
- ☆28Updated last year
- A framework for joint super-resolution and image synthesis, without requiring real training data☆167Updated last year
- ☆29Updated last year
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆50Updated 10 months ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆60Updated last year
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated this week
- ☆38Updated 3 years ago
- DICOM to NIfTI conversion, NIfTI tools☆97Updated 9 months ago
- Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…☆23Updated 3 months ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆46Updated 4 years ago
- perivascular space segmentation☆14Updated 2 years ago
- Automated Fiber Quantification☆77Updated last year
- A Python package providing I/O interface for Bruker data sets☆26Updated last year
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆72Updated 10 months ago
- Preprocessing of diffusion MRI☆154Updated last month
- Automated brain PET analysis pipeline☆27Updated 2 years ago