dama-lab / mouse-brain-atlasLinks
Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
☆23Updated last year
Alternatives and similar repositories for mouse-brain-atlas
Users that are interested in mouse-brain-atlas are comparing it to the libraries listed below
Sorting:
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆22Updated 4 years ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆234Updated 2 weeks ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆108Updated 10 months ago
- White matter tractography clustering and more...☆80Updated 4 months ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆17Updated 3 years ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆47Updated 4 years ago
- Multi-modal Image Registration And Connectivity anaLysis☆45Updated this week
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆39Updated last month
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆65Updated 2 years ago
- Automatic White Matter Bundle Segmentation☆249Updated 2 years ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆172Updated last year
- perivascular space segmentation☆17Updated 3 years ago
- Multi-site dMRI harmonization☆49Updated 5 months ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆77Updated last week
- ☆30Updated last year
- Harmonization of multi-site imaging data with ComBat (Python)☆151Updated 2 years ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆39Updated last year
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆31Updated 2 weeks ago
- RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.☆13Updated last month
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆106Updated 2 months ago
- ☆29Updated last year
- ☆28Updated 7 months ago
- Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…☆113Updated this week
- Python utilities for medical image and surface-based analysis☆36Updated 2 weeks ago
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆34Updated 11 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆152Updated last week
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆52Updated last year
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆32Updated last month
- Convolutional Neural Network trained for age prediction using a large (n=11,729) set of MRI scans from a highly diversified cohort spanni…☆55Updated 5 years ago