Alternatives and similar repositories for atlasBREX

Users that are interested in atlasBREX are comparing it to the libraries listed below

• npnl / PALS
  Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…
  ☆24Updated 7 months ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆155Updated this week
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated last week
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆47Updated 4 years ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆167Updated last week
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆268Updated 3 weeks ago
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆32Updated 5 years ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆105Updated this week
• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆50Updated 3 years ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• sammba-mri / sammba-mri
  small mammals brain MRI
  ☆15Updated 2 years ago
• IBT-FMI / SAMRI
  Small Animal Magnetic Resonance Imaging via Python.
  ☆43Updated last year
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆33Updated 2 weeks ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆72Updated 11 months ago
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆39Updated 10 months ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆77Updated this week
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆27Updated 4 months ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆127Updated last year
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆50Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆73Updated 3 weeks ago
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆60Updated last year
• nipreps / sdcflows
  Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
  ☆43Updated this week
• spinicist / QUIT
  A set of tools for processing Quantitative MR Images
  ☆63Updated 3 months ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆49Updated 5 months ago
• yeatmanlab / pyAFQ
  Please visit our new location: https://github.com/tractometry/pyAFQ
  ☆59Updated last year
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆31Updated 2 weeks ago
• ofgulban / segmentator
  3D MRI data exploration and segmentation tool.
  ☆75Updated 2 years ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆55Updated last week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆104Updated last week
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆65Updated 2 months ago