jlohmeier / atlasBREXLinks
atlasBREX: Automated averaged template-derived brain extraction in animal MRI
☆16Updated last year
Alternatives and similar repositories for atlasBREX
Users that are interested in atlasBREX are comparing it to the libraries listed below
Sorting:
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆67Updated last year
- Gradient Unwarping in Python☆36Updated 6 months ago
- small mammals brain MRI☆16Updated last year
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated last week
- Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…☆24Updated 2 months ago
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- Processing tools for high-resolution neuroimaging☆71Updated 7 months ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Updated last year
- defacing utility for MRI images☆122Updated last year
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆32Updated 4 years ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆41Updated last week
- dMRI based fiber tracking using parallel transport tractography☆25Updated 2 weeks ago
- Scripts to prepare MP2RAGE for Freesurfer☆28Updated last year
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆28Updated last month
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆52Updated last year
- Automated Fiber Quantification☆77Updated last year
- Preprocessing of arterial spin labeling (ASL) data☆49Updated this week
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆141Updated 2 weeks ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆97Updated last week
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆53Updated 2 weeks ago
- ☆17Updated last year
- niimath - a clone of fslmaths. Try the live demo:☆63Updated 3 weeks ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated 3 months ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆58Updated 2 years ago
- A set of tools for processing Quantitative MR Images☆64Updated 3 weeks ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆23Updated last year
- mrQ_BoxJoinBox☆22Updated last year
- fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI☆33Updated this week
- Multi-site dMRI harmonization☆48Updated last month
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆97Updated last year