atlasBREX: Automated averaged template-derived brain extraction in animal MRI
☆17Jan 15, 2024Updated 2 years ago
Alternatives and similar repositories for atlasBREX
Users that are interested in atlasBREX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- small mammals brain MRI☆15Oct 13, 2023Updated 2 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Feb 20, 2026Updated last month
- Small Animal Magnetic Resonance Imaging via Python.☆44Mar 4, 2024Updated 2 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 4 months ago
- A modular toolkit for Bruker MRI raw-data handling.☆54Feb 3, 2026Updated 2 months ago
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 5 years ago
- Brain Connectivity Analysis on FMRi data in a memory task performed at Baycrest Hospital☆10May 3, 2020Updated 5 years ago
- A Python package providing I/O interface for Bruker data sets☆29Mar 16, 2026Updated last month
- A medical image converter☆32Jul 20, 2025Updated 8 months ago
- Software dedicated to automatic generation of 3D models of brain structures.☆17Apr 24, 2017Updated 8 years ago
- ☆33Apr 8, 2026Updated last week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A C++ library for guessing MIME types from filenames☆11May 7, 2019Updated 6 years ago
- Compact hyperdrive for up to 16 independently movable electrodes☆18Aug 25, 2019Updated 6 years ago
- ☆11Oct 12, 2016Updated 9 years ago
- standalone Brain Extraction Tool (bet2), released by☆20Dec 23, 2015Updated 10 years ago
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆13Feb 18, 2026Updated 2 months ago
- Matlab GUI for single R2*/T2* mapping with multi-echo GRE data☆14Oct 4, 2022Updated 3 years ago
- Convert Pulseq files to Bruker sequences☆10Dec 12, 2018Updated 7 years ago
- DBT spectral analysis scripts for matlab☆10May 27, 2018Updated 7 years ago
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Processing Pipeline for Natural Object Dataset (NOD)☆12Jul 17, 2023Updated 2 years ago
- Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data☆24May 12, 2025Updated 11 months ago
- DICOM to NIfTI/BIDS validation script☆12May 1, 2025Updated 11 months ago
- ☆11Mar 28, 2018Updated 8 years ago
- A curated list of awesome governance resources☆20Aug 31, 2019Updated 6 years ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆54Mar 27, 2026Updated 3 weeks ago
- ☆13Feb 3, 2020Updated 6 years ago
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated last year
- An R package for statistics and machine learning with persistence diagrams☆18Oct 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Jun 18, 2024Updated last year
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Mar 5, 2024Updated 2 years ago
- Documentation☆10Oct 14, 2025Updated 6 months ago
- Hub for open-source MR-related software☆61Updated this week
- ☆14Sep 6, 2019Updated 6 years ago
- Scripts, tools, and documents on creating, parsing, and working with BIDS-structured data sets.☆13Oct 30, 2019Updated 6 years ago
- Linux for Asus Transformer Pad tf701☆13Jan 16, 2017Updated 9 years ago