jlohmeier / atlasBREX
atlasBREX: Automated averaged template-derived brain extraction in animal MRI
☆15Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for atlasBREX
- small mammals brain MRI☆16Updated last year
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆64Updated 11 months ago
- Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…☆23Updated last year
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆35Updated 6 months ago
- defacing utility for MRI images☆112Updated 9 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated last week
- Multiple Automatically Generated Templates brain segmentation algorithm☆48Updated 4 months ago
- Tools for MRI mouse brain morphometry☆30Updated 7 years ago
- Small Animal Magnetic Resonance Imaging via Python.☆42Updated 8 months ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆60Updated this week
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆75Updated this week
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆32Updated last month
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆41Updated 3 years ago
- Processing tools for high-resolution neuroimaging☆63Updated 2 weeks ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆133Updated last month
- Documentation for ANTs☆15Updated 9 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆88Updated this week
- Neuroimaging widgets for jupyter notebooks☆84Updated last year
- Guide to tutorial materials for ANTs/R☆45Updated 6 years ago
- Gradient Unwarping in Python☆30Updated 4 months ago
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆31Updated 4 years ago
- Python code for flexible pipeline control☆25Updated 2 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆23Updated last month
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆45Updated 3 weeks ago
- Data Processing Assistant for Resting-State fMRI☆25Updated 11 years ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆60Updated this week
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated 4 months ago
- A few routines to perform "auto reorient" in SPM☆15Updated last year
- A Python project that provides a wrapping over the FreeSurfer software interface.☆9Updated 5 years ago
- fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI☆23Updated 3 weeks ago