GT-EmoryMINDlab / rodent-whole-brain-preprocessing-recipe
A generally applicable whole-brain preprocessing toolbox for mice and rats
☆9Updated 7 months ago
Alternatives and similar repositories for rodent-whole-brain-preprocessing-recipe:
Users that are interested in rodent-whole-brain-preprocessing-recipe are comparing it to the libraries listed below
- ☆26Updated 9 months ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆17Updated 3 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆62Updated last week
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆49Updated this week
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/e…☆38Updated last week
- ☆34Updated 2 years ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated 11 months ago
- The NIfTI-MRS data standard: specification, code, and example data.☆14Updated 8 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆23Updated 2 weeks ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆22Updated last year
- Scripts to prepare MP2RAGE for Freesurfer☆25Updated last year
- MP2RAGE Scripts - T1 map correction & Background noise removal☆54Updated last year
- Bruker ParaVision to NIfTI conversion☆12Updated 4 years ago
- precon_all surface pipline☆20Updated 11 months ago
- ☆28Updated last year
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆63Updated last year
- Toolbox for developing pipelines for analysis of spectroscopy data. Includes code for loading Siemens spectroscopy data, and for spectral…☆22Updated last week
- BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data☆47Updated 7 months ago
- Toolbox for parameter estimation of the Standard Model of diffusion in white matter☆21Updated 7 months ago
- Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising☆58Updated 3 months ago
- ☆16Updated last year
- Tract based spatial statistics using ANTs and FSL☆12Updated 6 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated this week
- niimath - a clone of fslmaths. Try the live demo:☆59Updated last month
- Processing tools for high-resolution neuroimaging☆70Updated 2 months ago
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆15Updated 8 months ago
- DICOM to NIfTI conversion, NIfTI tools☆94Updated 5 months ago
- PysynthMRI is a python open-source tool which provides a user-friendly interface to synthesize contrast weighted images.☆18Updated last year
- GE HealthCare MRI research☆15Updated 3 weeks ago
- Preprocessing of arterial spin labeling (ASL) data☆46Updated this week