A generally applicable whole-brain preprocessing toolbox for mice and rats
☆12Jul 11, 2024Updated last year
Alternatives and similar repositories for rodent-whole-brain-preprocessing-recipe
Users that are interested in rodent-whole-brain-preprocessing-recipe are comparing it to the libraries listed below
Sorting:
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- A General Rodent MRI Skull-Stripping Tool Based on Multi-Center Data☆10Dec 7, 2024Updated last year
- ☆13Jul 2, 2024Updated last year
- Scripts to preprocess mouse MRI/fMRI/dMRI☆10May 22, 2024Updated last year
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆51Updated this week
- ☆31May 17, 2024Updated last year
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Feb 20, 2026Updated 2 weeks ago
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 5 years ago
- The NIfTI-MRS data standard: specification, code, and example data.☆17Jun 3, 2024Updated last year
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆41Nov 28, 2025Updated 3 months ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Mar 4, 2024Updated 2 years ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- PipeDream - open source neuroimaging pipelines☆17Aug 29, 2019Updated 6 years ago
- A modular toolkit for Bruker MRI raw-data handling.☆51Feb 3, 2026Updated last month
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- A repository for the Quantitative Imaging Toolkit (QIT)☆24Dec 7, 2025Updated 3 months ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆27Jan 20, 2024Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆28Updated this week
- improved susceptibility weighted imaging using multi-echo aquisitions☆29May 15, 2025Updated 9 months ago
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Compute the likeliness of an image region to vessels or ridges☆29Jul 20, 2017Updated 8 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Dec 31, 2023Updated 2 years ago
- A Rat fMRI multi-center study☆33Aug 12, 2022Updated 3 years ago
- fMRIPrep for Rodents☆13Feb 17, 2026Updated 2 weeks ago
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated last month
- A medical image converter☆32Jul 20, 2025Updated 7 months ago
- Pyneal - Real-time fMRI software☆41Jul 6, 2023Updated 2 years ago
- Quantitative MRI toolbox in Python☆13Dec 19, 2024Updated last year
- Primal-Dual Solver for Inverse Problems☆15Mar 24, 2021Updated 4 years ago
- Gannet is a free, open-source MATLAB-based software toolkit for analyzing edited 1H magnetic resonance spectroscopy (MRS) data.☆12Mar 2, 2026Updated last week
- Official code for Conformal Isometry of Lie Group Representation in Recurrent Network of Grid Cells (NeurIPS workshop on Symmetry and Geo…☆13Nov 1, 2022Updated 3 years ago
- MATLAB code for Multidimensional Diffusion MRI☆10Jun 28, 2021Updated 4 years ago
- Perivascular-space Identification Network using a Generalisable Unet☆23Oct 30, 2025Updated 4 months ago
- These are simulations meant to depict the working principles behind Magnetic Particle Imaging as teaching tools☆11Oct 7, 2023Updated 2 years ago
- ☆12Nov 27, 2019Updated 6 years ago
- playing music using the MRI gradient system☆14Oct 4, 2020Updated 5 years ago
- Convert Pulseq files to Bruker sequences☆10Dec 12, 2018Updated 7 years ago
- ☆14Nov 5, 2025Updated 4 months ago
- Demo of MRF processing pipeline used for data presented at ISMRM 2022 (program number 53)☆10May 5, 2022Updated 3 years ago