Alternatives and similar repositories for BEN:

Users that are interested in BEN are comparing it to the libraries listed below

• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆26Updated last week
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated 2 weeks ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 9 months ago
• AICONSlab / SynthSegCSVD
  CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI
  ☆13Updated last month
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆64Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated this week
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆68Updated this week
• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆16Updated 3 years ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆52Updated last year
• SNU-LIST / chi-separation
  Code for magnetic susceptibility source separation
  ☆25Updated last month
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆77Updated 3 months ago
• pboutinaud / SHIVA_PVS
  Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet
  ☆27Updated 6 months ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆14Updated 2 years ago
• Diffusion-MRI / awesome-preclinical-diffusion-mri
  ☆17Updated last year
• sameerd / DiffusionTensorImaging
  Single Shell Free Water Elimination Model for Diffusion Tensor Imaging
  ☆25Updated last year
• markus-nilsson / md-dmri
  MATLAB code for Multidimensional Diffusion MRI
  ☆45Updated last month
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• NYU-DiffusionMRI / DESIGNER-v2
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2
  ☆22Updated this week
• NYU-DiffusionMRI / SMI
  Toolbox for parameter estimation of the Standard Model of diffusion in white matter
  ☆24Updated last month
• QMICodeBase / TORTOISEV4
  Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation
  ☆25Updated last week
• HumanBrainED / NHP-BrainExtraction
  ☆36Updated 3 years ago
• NIFTI-Imaging / nifti_matlab
  Matlab for NIFTI support
  ☆9Updated 6 years ago
• vzachari / IronSmithQSM
  Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…
  ☆23Updated last year
• CompImg / LST-AI
  LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation
  ☆32Updated last month
• Haoyulance / WPSS
  Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter
  ☆13Updated last year
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆27Updated last year
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• thalamicseg / thomas_new
  Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…
  ☆23Updated 2 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 4 months ago
• KUL-Radneuron / KUL_VBG
  A workflow to allow Freesurfer recon-all to run on brain image with gliomas
  ☆29Updated 10 months ago