Alternatives and similar repositories for BEN:

Users that are interested in BEN are comparing it to the libraries listed below

• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆16Updated 3 years ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆25Updated 3 weeks ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated last week
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆66Updated this week
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 8 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆67Updated this week
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆64Updated last year
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆105Updated 4 months ago
• markus-nilsson / md-dmri
  MATLAB code for Multidimensional Diffusion MRI
  ☆45Updated 3 weeks ago
• ekaden / smt
  Microscopic diffusion anisotropy imaging made easy!
  ☆24Updated 6 years ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆47Updated this week
• Diffusion-MRI / awesome-preclinical-diffusion-mri
  ☆17Updated last year
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆57Updated 2 years ago
• sunhongfu / QSM
  Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.
  ☆74Updated 3 weeks ago
• NIFTI-Imaging / nifti_matlab
  Matlab for NIFTI support
  ☆9Updated 6 years ago
• sameerd / DiffusionTensorImaging
  Single Shell Free Water Elimination Model for Diffusion Tensor Imaging
  ☆24Updated last year
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆73Updated 2 months ago
• AICONSlab / SynthSegCSVD
  CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI
  ☆12Updated 2 weeks ago
• HumanBrainED / NHP-BrainExtraction
  ☆35Updated 3 years ago
• GT-EmoryMINDlab / rodent-whole-brain-preprocessing-recipe
  A generally applicable whole-brain preprocessing toolbox for mice and rats
  ☆9Updated 9 months ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 7 months ago
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• thalamicseg / thomas_new
  Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…
  ☆23Updated last month
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated 3 weeks ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆72Updated 4 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 3 months ago
• CIC-methods / FID-A
  Toolbox for simulation and processing of in-vivo magnetic resonance spectroscopy (MRS) data
  ☆87Updated last month
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆26Updated last month