U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
☆18Nov 15, 2021Updated 4 years ago
Alternatives and similar repositories for RodentMRISkullStripping
Users that are interested in RodentMRISkullStripping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Apr 8, 2026Updated 3 months ago
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated 2 years ago
- ☆15Apr 30, 2026Updated 2 months ago
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 6 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Rat fMRI multi-center study☆34Aug 12, 2022Updated 3 years ago
- A modular toolkit for Bruker MRI raw-data handling.☆57Feb 3, 2026Updated 5 months ago
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 6 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆37Jul 2, 2026Updated 3 weeks ago
- ☆12Nov 27, 2019Updated 6 years ago
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated 2 years ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆24Dec 2, 2025Updated 7 months ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆28Jan 20, 2024Updated 2 years ago
- MatLab code to create single shot spiral TSE sequences to be run using the Pulseq sequence programming environment☆14Sep 1, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MATLAB and Python tools for GRAPPA and Slice GRAPPA reconstruction☆19Jul 18, 2026Updated last week
- Enhancements of HCP Pipelines for non-human primates☆31Jul 7, 2022Updated 4 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆32Dec 31, 2023Updated 2 years ago
- A flexible Python-based GUI for stereotaxic experiment planning.☆13Feb 4, 2026Updated 5 months ago
- Cortical Parcellation☆10Jan 31, 2020Updated 6 years ago
- MR Image Reconstruction Tools for MATLAB☆19Aug 10, 2022Updated 3 years ago
- Collection of tutorial information and demonstrations for the sigpy-rf toolbox☆21Jun 13, 2025Updated last year
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 7 months ago
- An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia☆20Jul 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Graph SuperResolution Network using geometric deep learning.☆17Jan 25, 2021Updated 5 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- Segment Deep Gray Matter on QSM images using 3D CNN☆19Sep 24, 2018Updated 7 years ago
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆34Updated this week
- Small Animal Magnetic Resonance Imaging via Python.☆44Mar 4, 2024Updated 2 years ago
- A Python package providing I/O interface for Bruker data sets☆33Updated this week
- A MATLAB-based tutorial on GRAPPA parallel imaging reconstruction for MRI☆24Nov 14, 2022Updated 3 years ago
- PipeDream - open source neuroimaging pipelines☆17Aug 29, 2019Updated 6 years ago
- ☆20Jun 17, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Open-MRF is a modular framework for Magnetic Resonance Fingerprinting (MRF) that supports flexible sequence design, automated Bloch and E…☆19Mar 21, 2026Updated 4 months ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆61Updated this week
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆77May 19, 2023Updated 3 years ago
- Denoising an image is a classical problem that researchers are trying to solve for decades. In earlier times, researchers used filters to…☆11Dec 27, 2022Updated 3 years ago
- ☆22Updated this week
- ISMRM Raw Data Viewer☆10Feb 12, 2020Updated 6 years ago
- ☆28Jan 31, 2024Updated 2 years ago