U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
☆18Nov 15, 2021Updated 4 years ago
Alternatives and similar repositories for RodentMRISkullStripping
Users that are interested in RodentMRISkullStripping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32Apr 8, 2026Updated 2 months ago
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated last year
- ☆15Apr 30, 2026Updated last month
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 6 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rat fMRI multi-center study☆34Aug 12, 2022Updated 3 years ago
- A General Rodent MRI Skull-Stripping Tool Based on Multi-Center Data☆12Dec 7, 2024Updated last year
- A modular toolkit for Bruker MRI raw-data handling.☆56Feb 3, 2026Updated 4 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Updated this week
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 5 months ago
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated 2 years ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆28Jan 20, 2024Updated 2 years ago
- MatLab code to create single shot spiral TSE sequences to be run using the Pulseq sequence programming environment☆14Sep 1, 2025Updated 9 months ago
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆18May 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The ANTsX Ecosystem for Mapping the Mouse Brain☆23Dec 2, 2025Updated 6 months ago
- Enhancements of HCP Pipelines for non-human primates☆31Jul 7, 2022Updated 3 years ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆60May 25, 2026Updated 3 weeks ago
- A flexible Python-based GUI for stereotaxic experiment planning.☆12Feb 4, 2026Updated 4 months ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆32Dec 31, 2023Updated 2 years ago
- MATLAB toolkit for GRAPPA and Slice GRAPPA reconstruction☆18Oct 4, 2024Updated last year
- Multi-heap-sort for many small arrays, quicksort with 3 pivots for one big array, CUDA acceleration, CUDA memory compression.☆13Sep 29, 2024Updated last year
- MR Image Reconstruction Tools for MATLAB☆19Aug 10, 2022Updated 3 years ago
- Cortical Parcellation☆10Jan 31, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia☆20Jul 24, 2025Updated 10 months ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 6 months ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- Segment Deep Gray Matter on QSM images using 3D CNN☆19Sep 24, 2018Updated 7 years ago
- Collection of tutorial information and demonstrations for the sigpy-rf toolbox☆21Jun 13, 2025Updated last year
- Demonstration code for the MRM manuscript, "T2 Shuffling: Sharp, Multi-Contrast, Volumetric Fast Spin-Echo Imaging"☆22Jan 13, 2025Updated last year
- Matlab toolbox to reconstruct and process MRI data☆15Jan 30, 2023Updated 3 years ago
- Small Animal Magnetic Resonance Imaging via Python.☆44Mar 4, 2024Updated 2 years ago
- A MATLAB-based tutorial on GRAPPA parallel imaging reconstruction for MRI☆23Nov 14, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆34Jun 8, 2026Updated last week
- PipeDream - open source neuroimaging pipelines☆17Aug 29, 2019Updated 6 years ago
- A Python package providing I/O interface for Bruker data sets☆30Apr 17, 2026Updated last month
- ☆20Jun 17, 2024Updated last year
- Denoising an image is a classical problem that researchers are trying to solve for decades. In earlier times, researchers used filters to…☆11Dec 27, 2022Updated 3 years ago
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- ISMRM Raw Data Viewer☆10Feb 12, 2020Updated 6 years ago