CAMRIatUNC / RodentMRISkullStripping
U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
☆16Updated 3 years ago
Alternatives and similar repositories for RodentMRISkullStripping:
Users that are interested in RodentMRISkullStripping are comparing it to the libraries listed below
- ☆27Updated 11 months ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆64Updated last year
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆25Updated last month
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆50Updated 8 months ago
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆9Updated 9 months ago
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆53Updated 2 weeks ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆22Updated 3 years ago
- Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.☆74Updated 3 weeks ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated this week
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆66Updated last week
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆25Updated 3 weeks ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆23Updated last year
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated 3 weeks ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆11Updated 3 weeks ago
- MATLAB code for Multidimensional Diffusion MRI☆45Updated last month
- ☆17Updated last year
- Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)☆59Updated last month
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆41Updated last week
- DICOM to NIfTI conversion, NIfTI tools☆95Updated 8 months ago
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 3 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated last year
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆23Updated last year
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆105Updated 4 months ago
- ☆25Updated last month
- Automated brain PET analysis pipeline☆27Updated last year
- Microscopic diffusion anisotropy imaging made easy!☆24Updated 6 years ago
- Matlab for NIFTI support☆9Updated 6 years ago
- Code for magnetic susceptibility source separation☆25Updated 3 weeks ago
- mrQ_BoxJoinBox☆22Updated last year