U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
☆18Nov 15, 2021Updated 4 years ago
Alternatives and similar repositories for RodentMRISkullStripping
Users that are interested in RodentMRISkullStripping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32May 17, 2024Updated last year
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆12Jul 11, 2024Updated last year
- ☆13Jul 2, 2024Updated last year
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 5 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A Rat fMRI multi-center study☆33Aug 12, 2022Updated 3 years ago
- A General Rodent MRI Skull-Stripping Tool Based on Multi-Center Data☆10Dec 7, 2024Updated last year
- A modular toolkit for Bruker MRI raw-data handling.☆53Feb 3, 2026Updated last month
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Feb 20, 2026Updated last month
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 2 months ago
- ☆12Nov 27, 2019Updated 6 years ago
- Scripts to preprocess mouse MRI/fMRI/dMRI☆11May 22, 2024Updated last year
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆27Jan 20, 2024Updated 2 years ago
- MatLab code to create single shot spiral TSE sequences to be run using the Pulseq sequence programming environment☆14Sep 1, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆17May 22, 2024Updated last year
- The ANTsX Ecosystem for Mapping the Mouse Brain☆19Dec 2, 2025Updated 3 months ago
- Enhancements of HCP Pipelines for non-human primates☆30Jul 7, 2022Updated 3 years ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆52Updated this week
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Dec 31, 2023Updated 2 years ago
- A flexible Python-based GUI for stereotaxic experiment planning.☆12Feb 4, 2026Updated last month
- MATLAB toolkit for GRAPPA and Slice GRAPPA reconstruction☆17Oct 4, 2024Updated last year
- Multi-heap-sort for many small arrays, quicksort with 3 pivots for one big array, CUDA acceleration, CUDA memory compression.☆13Sep 29, 2024Updated last year
- MR Image Reconstruction Tools for MATLAB☆17Aug 10, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cortical Parcellation☆10Jan 31, 2020Updated 6 years ago
- An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia☆20Jul 24, 2025Updated 8 months ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆41Nov 28, 2025Updated 3 months ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- Graph SuperResolution Network using geometric deep learning.☆17Jan 25, 2021Updated 5 years ago
- Segment Deep Gray Matter on QSM images using 3D CNN☆19Sep 24, 2018Updated 7 years ago
- Collection of tutorial information and demonstrations for the sigpy-rf toolbox☆21Jun 13, 2025Updated 9 months ago
- Demonstration code for the MRM manuscript, "T2 Shuffling: Sharp, Multi-Contrast, Volumetric Fast Spin-Echo Imaging"☆21Jan 13, 2025Updated last year
- Matlab toolbox to reconstruct and process MRI data☆14Jan 30, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Small Animal Magnetic Resonance Imaging via Python.☆43Mar 4, 2024Updated 2 years ago
- A MATLAB-based tutorial on GRAPPA parallel imaging reconstruction for MRI☆22Nov 14, 2022Updated 3 years ago
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆34Dec 19, 2025Updated 3 months ago
- PipeDream - open source neuroimaging pipelines☆17Aug 29, 2019Updated 6 years ago
- ☆20Jun 17, 2024Updated last year
- Denoising an image is a classical problem that researchers are trying to solve for decades. In earlier times, researchers used filters to…☆11Dec 27, 2022Updated 3 years ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆75May 19, 2023Updated 2 years ago