Alternatives and similar repositories for fmriprep-rodents

Users that are interested in fmriprep-rodents are comparing it to the libraries listed below

• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆32Updated 5 years ago
• neurolabusc / nii_preprocess
  nii_preprocess adapted for LARC and ABC studies at UofSC
  ☆23Updated 3 years ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆73Updated last week
• IBT-FMI / SAMRI
  Small Animal Magnetic Resonance Imaging via Python.
  ☆43Updated last year
• bbfrederick / rapidtide
  rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
  ☆87Updated this week
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆67Updated 2 years ago
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated 2 years ago
• CyclotronResearchCentre / spm_auto_reorient
  A few routines to perform "auto reorient" in SPM
  ☆16Updated 2 years ago
• CMRR-C2P / MB
  Support for CMRR multi-band pulse sequences
  ☆60Updated 7 months ago
• Gilles86 / pymp2rage
  Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data
  ☆21Updated 5 months ago
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆39Updated 10 months ago
• spinicist / QUIT
  A set of tools for processing Quantitative MR Images
  ☆63Updated 3 months ago
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆46Updated this week
• khanlab / hippunfold
  BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
  ☆61Updated 2 weeks ago
• jimmyshen007 / NeMo
  NeMo brain tractograms tool
  ☆12Updated 4 years ago
• raphaelvallat / conn_tools
  Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
  ☆28Updated 8 years ago
• spinicist / nanslice
  A Python implementation of 'dual-coding'
  ☆43Updated last year
• jeffmacinnes / pyneal
  Pyneal - Real-time fMRI software
  ☆39Updated 2 years ago
• QMICodeBase / TORTOISEV4
  Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation
  ☆31Updated last month
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆55Updated this week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆165Updated 2 months ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆102Updated 2 weeks ago
• wtclarke / mrs_nifti_standard
  The NIfTI-MRS data standard: specification, code, and example data.
  ☆16Updated last year
• stijnimaging / ExploreDTI_scripts
  This repository holds several explanations of ExploreDTI scripts
  ☆12Updated 7 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆71Updated last week
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆116Updated last month
• nipreps / sdcflows
  Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
  ☆43Updated last week
• muscbridge / PyDesigner
  A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…
  ☆30Updated last month
• preprocessed-connectomes-project / quality-assessment-protocol
  Scripts and documentation for the PCP's protocol for assessing data quality.
  ☆41Updated 4 years ago
• rordenlab / spmScripts
  Handy scripts for SPM
  ☆76Updated 5 years ago