Alternatives and similar repositories for fmriprep-rodents:

Users that are interested in fmriprep-rodents are comparing it to the libraries listed below

• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆64Updated last week
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆31Updated 4 years ago
• khanlab / hippunfold
  BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
  ☆57Updated this week
• neurolabusc / nii_preprocess
  nii_preprocess adapted for LARC and ABC studies at UofSC
  ☆22Updated 3 years ago
• CMRR-C2P / MB
  Support for CMRR multi-band pulse sequences
  ☆58Updated 3 weeks ago
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• Gilles86 / pymp2rage
  Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data
  ☆20Updated 11 months ago
• bbfrederick / rapidtide
  rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
  ☆77Updated this week
• NIFTI-Imaging / nifti_matlab
  Matlab for NIFTI support
  ☆9Updated 6 years ago
• grandjeanlab / MultiRat
  A Rat fMRI multi-center study
  ☆33Updated 2 years ago
• spinicist / nanslice
  A Python implementation of 'dual-coding'
  ☆41Updated 11 months ago
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆40Updated 3 weeks ago
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆35Updated 3 months ago
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆57Updated 2 years ago
• IBT-FMI / SAMRI
  Small Animal Magnetic Resonance Imaging via Python.
  ☆43Updated last year
• QMICodeBase / TORTOISEV4
  Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation
  ☆25Updated last week
• QSMxT / QSMxT
  QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.
  ☆43Updated this week
• HumanBrainED / NHP-BrainExtraction
  ☆35Updated 3 years ago
• raphaelvallat / conn_tools
  Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
  ☆25Updated 8 years ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆64Updated 4 months ago
• neurabenn / precon_all
  precon_all surface pipline
  ☆20Updated last year
• PRIME-RE / RheMAP
  Non-linear warps between common rhesus macaque brain templates
  ☆25Updated last year
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated this week
• Chaogan-Yan / DPARSF
  Data Processing Assistant for Resting-State fMRI
  ☆26Updated 11 years ago
• SteenMoeller / NORDIC_Raw
  Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
  ☆59Updated 5 months ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated last week
• jimmyshen007 / NeMo
  NeMo brain tractograms tool
  ☆12Updated 4 years ago
• CyclotronResearchCentre / spm_auto_reorient
  A few routines to perform "auto reorient" in SPM
  ☆16Updated 2 years ago
• GT-EmoryMINDlab / rodent-whole-brain-preprocessing-recipe
  A generally applicable whole-brain preprocessing toolbox for mice and rats
  ☆9Updated 8 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 3 months ago