fMRIPrep for Rodents
☆13Feb 17, 2026Updated 4 months ago
Alternatives and similar repositories for fmriprep-rodents
Users that are interested in fmriprep-rodents are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A twolevel deformation based morphometry pipeline using ants☆13May 16, 2025Updated last year
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆61Updated this week
- ☆15Apr 30, 2026Updated 2 months ago
- ☆34Mar 5, 2026Updated 4 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆39May 12, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A modular toolkit for Bruker MRI raw-data handling.☆56Feb 3, 2026Updated 5 months ago
- A Rat fMRI standardized protocol☆14Jul 25, 2024Updated last year
- Code for the paper "CEREBRUM-7T: fast and fully-volumetric brain segmentation of 7 Tesla MR volumes"☆13Jun 30, 2026Updated last week
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Jul 2, 2026Updated last week
- A Rat fMRI multi-center study☆34Aug 12, 2022Updated 3 years ago
- Docker XPRA HTML5 Image with OpenGL support for NVIDIA cards☆13Oct 28, 2020Updated 5 years ago
- MATLAB toolbox implementing template independent component analysis☆12Sep 14, 2020Updated 5 years ago
- Purifibre removes spurious streamlines from tractograms☆10Apr 14, 2022Updated 4 years ago
- ☆32Apr 8, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Package for (pre)processing of anatomical and (linescanning) fMRI data☆14Feb 26, 2025Updated last year
- Small Animal Magnetic Resonance Imaging via Python.☆44Mar 4, 2024Updated 2 years ago
- PCA Model for Brain Extraction☆18Jan 2, 2019Updated 7 years ago
- R package to implement template ICA☆11May 20, 2025Updated last year
- BIDS App Bootstrap (BABS)☆12Jun 10, 2026Updated last month
- small mammals brain MRI☆15Oct 13, 2023Updated 2 years ago
- Benchmark denoising strategies available from fmriprep.☆17Dec 18, 2025Updated 6 months ago
- Tools for spatial and temporal autocorrelation☆28Apr 24, 2023Updated 3 years ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆24Dec 2, 2025Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Sample code for triggering Globus Flows using the Python watchdog library.☆20May 25, 2026Updated last month
- Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.☆17Feb 13, 2026Updated 4 months ago
- ☆12Jun 15, 2021Updated 5 years ago
- MDBook preprocessor for converting emojicodes (e.g. `: cat :`) into emojis 🐱☆14Sep 21, 2023Updated 2 years ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- Modified version of QPBO algorithm by Vladimir Kolmogorov for very large graphs.☆11Dec 14, 2018Updated 7 years ago
- Brain and body detectors for fetal MRI developed during my PhD☆11Sep 8, 2020Updated 5 years ago
- slides and notebooks for tutorials and pitches☆22May 31, 2018Updated 8 years ago
- Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.☆53Jun 29, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Supporting LaTeX infrastructure for Jupyter Book☆31Dec 11, 2023Updated 2 years ago
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆23Apr 24, 2023Updated 3 years ago
- A Tractography Tool for Diffusion MRI☆160Updated this week
- Surface version of the M-CRIB atlases.☆14Jun 2, 2026Updated last month
- SIVIC is an open-source, standards-based software framework and application suite for processing and visualizing DICOM MR Spectroscopy da…☆36Dec 10, 2025Updated 7 months ago
- Python implementation for investigating the reliability of ICA estimates by clustering and visualization☆19Apr 21, 2022Updated 4 years ago
- Demo code for the paper "Discrete Optimization for Shape Matching"☆12Jun 25, 2021Updated 5 years ago