Alternatives and similar repositories for atlases

Users that are interested in atlases are comparing it to the libraries listed below

• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated this week
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆73Updated last week
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆66Updated this week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆160Updated this week
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 9 months ago
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆86Updated this week
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 8 months ago
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆50Updated this week
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆65Updated 8 months ago
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆41Updated 3 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆69Updated last year
• openneuropet / PET2BIDS
  PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…
  ☆30Updated last week
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆44Updated last week
• ChristianGaser / cat12
  Computational Anatomy Toolbox for SPM12 or SPM25
  ☆36Updated this week
• PennLINC / xcp_d
  Post-processing of fMRIPrep, NiBabies, and HCP outputs
  ☆97Updated this week
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆105Updated 10 months ago
• pboutinaud / SHiVAi
  The SHiVAi pipeline for preprocessing, AI-based segmentation, and reporting of cCVSD biomarkers from brain MRI images
  ☆17Updated 2 months ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆99Updated last week
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆36Updated 9 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated last year
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆36Updated 5 months ago
• NotaCS / Functionnectome
  Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.
  ☆30Updated last year
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated last month
• neurodata / neuroparc
  ☆192Updated 2 years ago
• ntustison / CrossLong
  Nature is a language---can't you read?
  ☆12Updated 3 weeks ago
• daducci / COMMIT
  Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI
  ☆46Updated this week
• MICA-MNI / micapipe
  micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…
  ☆106Updated 3 months ago
• yetianmed / subcortex
  ☆125Updated last month