Tools for MRI mouse brain morphometry
☆32Jan 16, 2017Updated 9 years ago
Alternatives and similar repositories for mousemorph
Users that are interested in mousemorph are comparing it to the libraries listed below
Sorting:
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 5 years ago
- small mammals brain MRI☆15Oct 13, 2023Updated 2 years ago
- Matlab GUI for single R2*/T2* mapping with multi-echo GRE data☆14Oct 4, 2022Updated 3 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆27Jan 20, 2024Updated 2 years ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Mar 4, 2024Updated last year
- The ANTsX Ecosystem for Mapping the Mouse Brain☆18Dec 2, 2025Updated 2 months ago
- A Python package providing I/O interface for Bruker data sets☆29Updated this week
- MRI Coil-reconstruct Toolbox☆15Apr 2, 2020Updated 5 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆35Feb 20, 2026Updated last week
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆12Jul 11, 2024Updated last year
- Scripts to preprocess mouse MRI/fMRI/dMRI☆10May 22, 2024Updated last year
- Demonstration notebooks for MIRT.jl☆13Dec 8, 2021Updated 4 years ago
- Convert Pulseq files to Bruker sequences☆10Dec 12, 2018Updated 7 years ago
- Open source software and hardware transmission system for traditional and rotating MR☆11Jun 28, 2019Updated 6 years ago
- A modular toolkit for Bruker MRI raw-data handling.☆51Feb 3, 2026Updated 3 weeks ago
- Julia toolbox for Quantitative Susceptibility Mapping☆16Feb 15, 2024Updated 2 years ago
- Code for magnetic susceptibility source separation☆30Sep 16, 2025Updated 5 months ago
- ☆31May 17, 2024Updated last year
- 👐 This package includes 3 MR fingerprinting methods to reconstruct parametric maps: standard dictionary-based matching and dictionary-ba…☆15Dec 15, 2020Updated 5 years ago
- Environment for Linear and non-linear Image reconstruction using Gpu Acceleration☆14Aug 13, 2025Updated 6 months ago
- ☆11Nov 15, 2023Updated 2 years ago
- General phase regularized MRI reconstruction using phase cycling☆16Oct 12, 2017Updated 8 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Dec 31, 2023Updated 2 years ago
- ☆18Feb 6, 2026Updated 3 weeks ago
- A generalized GRAPPA algorithm that works for arbitrary (non-Cartesian) readout trajectories☆17Oct 24, 2019Updated 6 years ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- Python module to handle Bruker Paravision MRI files (parameter files, raw data, processed data).☆21Feb 3, 2026Updated 3 weeks ago
- MATLAB implementation of Non-Uniform Fast Fourier Transform in 3D☆21Oct 14, 2024Updated last year
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- Demonstration code for the MRM manuscript, "T2 Shuffling: Sharp, Multi-Contrast, Volumetric Fast Spin-Echo Imaging"☆20Jan 13, 2025Updated last year
- Radial Interstices Enable Speedy Low-Volume Imaging☆27Updated this week
- An end-to-end hybrid MR simulator/console☆75Aug 21, 2023Updated 2 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆77Feb 2, 2026Updated 3 weeks ago
- Source code for the ISMRM Sunrise Recon Course☆36Apr 28, 2014Updated 11 years ago
- World's fastest GPU-accelerated radial Fast Fourier Transform☆32Jan 12, 2026Updated last month
- Code for Extreme MRI☆34Feb 21, 2020Updated 6 years ago
- Python implementations of GRAPPA-like algorithms.☆78Sep 22, 2024Updated last year
- NiiVue extension for vscode + standalone web app☆42Updated this week