cookpa / pipedreamLinks
PipeDream - open source neuroimaging pipelines
☆16Updated 6 years ago
Alternatives and similar repositories for pipedream
Users that are interested in pipedream are comparing it to the libraries listed below
Sorting:
- Using ANTs to process multiple MR image types for a single subject☆26Updated 8 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Updated last year
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆29Updated 2 months ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆61Updated last year
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- Scripts and documentation for the PCP's protocol for assessing data quality.☆41Updated 4 years ago
- dMRI based fiber tracking using parallel transport tractography☆27Updated 3 months ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆74Updated 3 months ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆71Updated this week
- A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.☆46Updated 12 years ago
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆97Updated 6 months ago
- Configurable Pipeline for the Analysis of Connectomes☆70Updated 2 weeks ago
- Connectome Mapper☆39Updated 3 years ago
- A reimplementation of MAGeTbrain using only ANTs tools.☆16Updated 2 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆72Updated 2 weeks ago
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆32Updated 5 years ago
- Harmonizing neuroimaging data across scanners and sites☆35Updated 5 years ago
- Processing tools for high-resolution neuroimaging☆71Updated 10 months ago
- Intensity normalization of structural MRIs using RAVEL☆30Updated 2 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆59Updated last year
- BIDS app wrapping recon-all from FreeSurfer☆43Updated 2 weeks ago
- GNU Octave library for connectivity analysis in large fMRI datasets☆30Updated 3 years ago
- JHU-MNI-ss (Eve) Template☆14Updated 5 years ago
- A Python implementation of 'dual-coding'☆43Updated last year
- Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data☆115Updated 3 weeks ago
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆101Updated last year
- niimath - a clone of fslmaths. Try the live demo:☆69Updated this week
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆77Updated 4 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆104Updated this week