Alternatives and similar repositories for pipedream

Users that are interested in pipedream are comparing it to the libraries listed below

• jeffduda / NeuroBattery
  Using ANTs to process multiple MR image types for a single subject
  ☆25Updated 7 years ago
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆50Updated last year
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆95Updated 4 months ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated last month
• FCP-INDI / C-PAC
  Configurable Pipeline for the Analysis of Connectomes
  ☆68Updated this week
• neurospin / pypreprocess
  Preprocessing scripts for neuro imaging
  ☆110Updated last year
• preprocessed-connectomes-project / quality-assessment-protocol
  Scripts and documentation for the PCP's protocol for assessing data quality.
  ☆41Updated 3 years ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 8 months ago
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆34Updated 5 years ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆70Updated last week
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆59Updated 10 months ago
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 7 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆69Updated last year
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆99Updated last week
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 9 months ago
• johncolby / along-tract-stats
  A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
  ☆45Updated 12 years ago
• maartenmennes / ICA-AROMA
  ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
  ☆98Updated last year
• akeshavan / mindcontrol
  MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:
  ☆54Updated 6 years ago
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆112Updated 6 months ago
• DevelopingHCP / structural-pipeline
  dHCP structural pipeline
  ☆16Updated 4 years ago
• neurodesk / neurodesktop
  The plug-and-play, browser-accessible, containerised data analysis environment.
  ☆48Updated this week
• stnava / ANTsDoc
  Documentation for ANTs
  ☆16Updated 10 years ago
• spinicist / nanslice
  A Python implementation of 'dual-coding'
  ☆42Updated last year
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆66Updated this week
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆28Updated last year
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆44Updated last week
• Chaogan-Yan / DPARSF
  Data Processing Assistant for Resting-State fMRI
  ☆26Updated 12 years ago
• bids-apps / CPAC
  BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
  ☆14Updated 9 months ago
• trislett / TFCE_mediation
  Fast regression and mediation analysis of vertex or voxel MRI data with TFCE
  ☆31Updated 2 years ago