rmarkello / snfpyLinks
Similarity network fusion in Python
☆89Updated 5 years ago
Alternatives and similar repositories for snfpy
Users that are interested in snfpy are comparing it to the libraries listed below
Sorting:
- HiGCN: a hierarchical graph convolution network for representation learning of gene expression data☆13Updated 4 years ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆172Updated 4 years ago
- ☆11Updated 2 years ago
- Multi-task deep learning framework for multi-omics data analysis☆48Updated 3 years ago
- End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.☆34Updated 4 years ago
- ☆44Updated last year
- Framework for Interpretable Neural Networks☆111Updated 8 months ago
- MOMA: A Multi-task Attention Learning Algorithm for Multi-omics Data Interpretation and Classification☆18Updated 2 years ago
- An implementation of Consensus clustering in Python☆62Updated last year
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆18Updated 5 years ago
- Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.☆187Updated last month
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Updated 4 years ago
- ☆24Updated 5 years ago
- Deep-Learning framework for multi-omic and survival data integration☆86Updated last year
- ☆20Updated 4 years ago
- Decision curve analysis library for Python☆12Updated 5 years ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆164Updated 4 years ago
- An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.☆160Updated 3 years ago
- Machine Learning in NeuroImaging (MLNI) is a python package that performs various tasks using neuroimaging data.☆21Updated 4 months ago
- ☆98Updated last year
- pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …☆89Updated last year
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆67Updated last year
- ☆68Updated last month
- Repo for Tang et al, bioRxiv 454793 (2018)☆43Updated 6 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated last month
- Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma☆15Updated 2 years ago
- A Data-Driven Biopsychosocial Framework Determining the Spreading of Chronic Pain☆13Updated 2 years ago
- Similarity Network Fusion☆37Updated 10 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects☆14Updated 2 years ago