A python and C++ library for reading and writing neuronal morphologies
☆28Feb 26, 2025Updated last year
Alternatives and similar repositories for MorphIO
Users that are interested in MorphIO are comparing it to the libraries listed below
Sorting:
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layer☆20Feb 26, 2025Updated last year
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- btmorph v2. Object-oriented library to analyze neuronal structure☆12Sep 30, 2017Updated 8 years ago
- Neuronal Morphology Analysis Tool☆108Feb 26, 2025Updated last year
- A python package for the topological analysis of neurons.☆28Feb 26, 2025Updated last year
- NEAT (NEural Analysis Toolkit)☆20Dec 24, 2025Updated 2 months ago
- Tools for working with single-neuron morphological reconstructions☆22Feb 14, 2026Updated 2 weeks ago
- ☆11Nov 2, 2023Updated 2 years ago
- Public release repository for STochastic Engine for Pathway Simulation (STEPS)☆43May 19, 2025Updated 9 months ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne…☆136Oct 29, 2025Updated 4 months ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10May 13, 2022Updated 3 years ago
- Needed for NEURON GUI☆10Jun 13, 2025Updated 8 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19May 18, 2023Updated 2 years ago
- The primary housekeeping repository for the INCF/OCNS Software Working Group, and the sources for the web site.☆11Feb 5, 2025Updated last year
- Interactive visualization framework for geometrically detailed neuron simulations☆31Apr 27, 2022Updated 3 years ago
- Fancier logging with python.☆16Feb 2, 2026Updated 3 weeks ago
- Dendritic Spine Analysis Software☆13Apr 27, 2023Updated 2 years ago
- Topological Neuron Synthesis☆42Feb 26, 2025Updated last year
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆16Feb 16, 2026Updated last week
- 2D image registration in python, using napari.☆16Dec 7, 2021Updated 4 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- ☆18Updated this week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Nov 24, 2023Updated 2 years ago
- A Python package to download neuronal morphologies☆18Feb 3, 2026Updated 3 weeks ago
- Fast, volumetric cell detection. In development.☆22Feb 4, 2026Updated 3 weeks ago
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆20Mar 21, 2022Updated 3 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 3 months ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 3 years ago
- PyNeval, a toolbox for quantative analysis on neuron reconstruction result.☆17Nov 18, 2021Updated 4 years ago
- libminc is the core library and API of the MINC toolkit☆19Updated this week
- A GUI for running popular spike sorting algorithms on extracellular data of any file format.☆15Jun 27, 2021Updated 4 years ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- The Brain Scaffold Builder☆22Jun 11, 2025Updated 8 months ago
- Tools to use with Brian 2, in particular for visualization☆19Aug 23, 2024Updated last year
- Code for fitting neural spike trains with nonparametric hidden Markov and semi-Markov models built upon mattjj's PyHSMM framework.☆15Aug 10, 2018Updated 7 years ago
- Open schemas for F.A.I.R. neuroscience data☆43Mar 22, 2024Updated last year
- Python-based module with spike sorter wrappers and a simple API for running them.☆20Sep 8, 2021Updated 4 years ago