Alternatives and similar repositories for publication_template

Users that are interested in publication_template are comparing it to the libraries listed below

• AndrewGYork / remote_refocus

  View on GitHub
  A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…
  ☆13Jun 22, 2024Updated last year
• clij / clij-docs

  View on GitHub
  Online documentation and reference for CLIJ
  ☆28May 21, 2021Updated 4 years ago
• tobyhodges / ITPP

  View on GitHub
  Introduction to Python Programming
  ☆11Mar 31, 2020Updated 5 years ago
• gokceneraslan / biorxiv-sanity-preserver

  View on GitHub
  Web interface for browsing, search and filtering recent biorxiv submissions
  ☆14May 7, 2017Updated 8 years ago
• bede / seqsum

  View on GitHub
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated this week
• AndrewGYork / tools

  View on GitHub
  Things we use regularly
  ☆29Aug 5, 2025Updated 6 months ago
• brentp / python-giggle

  View on GitHub
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆15Feb 13, 2018Updated 8 years ago
• fedebarabas / tormenta

  View on GitHub
  Measurement control and analysis for super-resolution localization fluorescence microscopy
  ☆15Feb 6, 2018Updated 8 years ago
• YeoLab / anchor

  View on GitHub
  Find bimodal, unimodal, and multimodal features in your data
  ☆27Oct 26, 2018Updated 7 years ago
• cmongis / psfj

  View on GitHub
  PSFj - Know your microscope fluorescence
  ☆24Mar 6, 2020Updated 5 years ago
• shahcompbio / timescape

  View on GitHub
  Visualization tool for temporal clonal evolution.
  ☆18Mar 13, 2020Updated 5 years ago
• formbio / laava

  View on GitHub
  LAAVA: Long-read AAV Analysis
  ☆13Dec 9, 2025Updated 2 months ago
• PacificBiosciences / pb-StarPhase

  View on GitHub
  A phase-aware pharmacogenomic diplotyper for PacBio datasets
  ☆19Dec 9, 2025Updated 2 months ago
• kdm9 / SRApy

  View on GitHub
  SRA python tools
  ☆11Jun 9, 2021Updated 4 years ago
• ImageScience / FeatureJ

  View on GitHub
  ImageJ plugin suite for image feature extraction
  ☆10Dec 17, 2015Updated 10 years ago
• leschzinerlab / Motion-correction

  View on GitHub
  Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories
  ☆12Mar 28, 2017Updated 8 years ago
• Imamachi-n / BioRxivCurator

  View on GitHub
  Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
  ☆11May 9, 2020Updated 5 years ago
• hmkainul / vscode-cif

  View on GitHub
  CIF (Crystallographic Information File) support for Visual Studio Code.
  ☆13Nov 16, 2025Updated 2 months ago
• imjoy-team / imjoy-jupyter-extension

  View on GitHub
  Running ImJoy plugins in Jupyter notebooks
  ☆11Jan 10, 2023Updated 3 years ago
• kalekundert / exmemo

  View on GitHub
  Lab notebook for people who like the command line.
  ☆11Jun 19, 2024Updated last year
• lukasz-migas / napari-plot

  View on GitHub
  1d plotting in napari-based canvas.
  ☆25Updated this week
• MIAnalyzer / MIA

  View on GitHub
  Microsopic Image Analyzer (MIA)
  ☆28Aug 19, 2025Updated 5 months ago
• imcf / auto-tx

  View on GitHub
  AutoTx - an intelligent background file transfer service for Windows.
  ☆28Oct 29, 2025Updated 3 months ago
• adamshch / GraFT-analysis

  View on GitHub
  This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…
  ☆15Nov 1, 2023Updated 2 years ago
• COMBINE-lab / mim

  View on GitHub
  A small, auxiliary index to massively improve parallel fastq parsing
  ☆30Updated this week
• PreibischLab / multiview-simulation

  View on GitHub
  Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise
  ☆13Jun 14, 2022Updated 3 years ago
• wcmc-its / ReCiter-PubMed-Retrieval-Tool

  View on GitHub
  A tool for retrieving articles from PubMed. Can work as a standalone application or in conjunction with the author disambiguation applica…
  ☆14Dec 4, 2025Updated 2 months ago
• tlambert03 / imarispy

  View on GitHub
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Aug 13, 2021Updated 4 years ago
• Bioconductor / ExperimentHub

  View on GitHub
  Client to access ExperimentHub resources
  ☆11Oct 30, 2025Updated 3 months ago
• tomotools / tomotools

  View on GitHub
  Scripts to make cryo-electron tomography a bit easier
  ☆15Jul 30, 2025Updated 6 months ago
• databio / pararead

  View on GitHub
  Simplifies parallel processing of DNA sequencing reads
  ☆10Feb 3, 2026Updated last week
• Leveltlab / SpectralSegmentation

  View on GitHub
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Nov 24, 2025Updated 2 months ago
• saturncloud / images

  View on GitHub
  Images for Saturn Cloud
  ☆12Dec 18, 2025Updated last month
• macronucleus / Chromagnon

  View on GitHub
  Image correction software for chromatic shifts in fluorescence microscopic images
  ☆25Oct 17, 2025Updated 3 months ago
• imjoy-team / ImJoy

  View on GitHub
  ImJoy: Deep Learning Made Easy!
  ☆190Oct 12, 2023Updated 2 years ago
• rhpvorderman / sequali

  View on GitHub
  Fast sequencing data quality metrics
  ☆31Sep 10, 2025Updated 5 months ago
• hammerlab / cytokit

  View on GitHub
  Microscopy Image Cytometry Toolkit
  ☆114Jul 15, 2022Updated 3 years ago
• incertae-sedis / smof

  View on GitHub
  Explore and analyze biological sequence data
  ☆17Aug 1, 2024Updated last year
• PacificBiosciences / pbAA

  View on GitHub
  ☆27Dec 22, 2025Updated last month