A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec
☆175Mar 16, 2026Updated last month
Alternatives and similar repositories for PecanPy
Users that are interested in PecanPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Apr 22, 2026Updated last week
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated 3 months ago
- KGX is a Python library for exchanging Knowledge Graphs☆140Apr 14, 2026Updated 2 weeks ago
- 🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations☆626Feb 24, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- NetworkX-based Python library for representing ontologies☆95Jul 12, 2023Updated 2 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Fastest network node embeddings in the west☆557Dec 25, 2024Updated last year
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- Implementation of the node2vec algorithm.☆1,296Oct 6, 2025Updated 6 months ago
- 🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.☆40Sep 29, 2025Updated 7 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- 📐 Results for the Ranking Metrics submission @ GLB 2022☆10Apr 6, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🎡 Unified access to OLS instances like from the EBI and TIB☆13Apr 20, 2026Updated last week
- Grounding of biomedical named entities with contextual disambiguation☆51Mar 30, 2026Updated 3 weeks ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- A short course on network data science at Johns Hopkins University☆20Nov 3, 2023Updated 2 years ago
- ☆34Jul 28, 2018Updated 7 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Mar 16, 2026Updated last month
- Mondo Disease Ontology☆300Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆62Apr 23, 2026Updated last week
- A package to run real time analysis of nanopore methylation data.☆21Apr 12, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- A tool for automated uploading and version management of scientific data to Zenodo☆45Apr 13, 2026Updated 2 weeks ago
- Github repo for the Experimental Factor Ontology (EFO)☆63Apr 21, 2026Updated last week
- MayaChemTools is a growing collection of Perl and Python scripts, modules, and classes to support a variety of day-to-day computational d…☆10Sep 1, 2020Updated 5 years ago
- Diffusion model for gene regulatory network inference.☆28Mar 20, 2026Updated last month
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 5 months ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- A Python frontend to (Open Biomedical) Ontologies.☆259Jan 13, 2026Updated 3 months ago
- Linear-time sampling algorithm for geometric inhomogeneous random graphs with a special case implementation for hyperbolic random graphs.☆15Dec 4, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🪝 What's the latest version for each database?☆29Updated this week
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 2 years ago
- Modular environmental exposures ontology☆38Updated this week
- ☆31Oct 26, 2021Updated 4 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Graph Algorithms☆632Jan 28, 2026Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆44Apr 21, 2026Updated last week