Alternatives and similar repositories for SANA

Users that are interested in SANA are comparing it to the libraries listed below

• stringologytimes / StringologyTimes
  Paper Collection for Stringologists
  ☆17Updated last month
• martin-steinegger / setcover
  linear (time,space) greedy set cover implementation
  ☆30Updated 4 years ago
• mengyao / Complete-Striped-Smith-Waterman-Library
  ☆314Updated 3 weeks ago
• NVlabs / nvbio-gpl
  NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
  ☆57Updated 11 years ago
• BioJulia / Bio.jl
  [DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
  ☆266Updated 2 years ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆266Updated 3 years ago
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆297Updated 5 months ago
• maickrau / GraphAligner
  ☆284Updated last month
• mpetri / FM-Index
  FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…
  ☆109Updated 11 years ago
• seqan / seqan
  SeqAn's official repository.
  ☆499Updated last month
• rzshrote / pybrops
  Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.
  ☆11Updated last year
• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆275Updated 5 months ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated 2 years ago
• BEETL / BEETL
  BEETL
  ☆97Updated 2 years ago
• seqan / seqan3
  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
  ☆446Updated 2 weeks ago
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆83Updated 3 years ago
• felipelouza / gsa-is
  Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
  ☆26Updated 2 months ago
• shubhamchandak94 / HARC
  Fastq compression
  ☆19Updated 6 years ago
• MicrosoftResearch / Azimuth
  Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
  ☆239Updated 5 years ago
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆218Updated last year
• km-git-acc / dbn_upper_bound
  Computational effort to upper bound the de Bruijn-Newman constant as part of a Polymath project
  ☆13Updated 2 years ago
• dib-lab / khmer
  In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
  ☆783Updated last year
• asbschmidt / gpuPairHMM
  gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling
  ☆12Updated 3 months ago
• dnbaker / sketch
  C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
  ☆158Updated last year
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆68Updated 2 years ago
• pangenome / odgi
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
  ☆234Updated this week
• samtools / htslib
  C library for high-throughput sequencing data formats
  ☆904Updated this week
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆301Updated last year
• dcroote / stanford-thesis-example
  Stanford LaTeX thesis template
  ☆58Updated last month
• CompEvol / beast2
  Bayesian Evolutionary Analysis by Sampling Trees
  ☆267Updated 3 weeks ago