waynebhayes / SANA

Related projects ⓘ

Alternatives and complementary repositories for SANA

• martin-steinegger / setcover
  linear (time,space) greedy set cover implementation
  ☆29Updated 3 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated last year
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆41Updated 6 months ago
• stringologytimes / StringologyTimes
  Paper Collection for Stringologists
  ☆16Updated 2 weeks ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 5 years ago
• AlexSafatli / Pylogeny
  Python framework for phylogenetic tree landscapes
  ☆20Updated 8 years ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 5 years ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆64Updated 4 years ago
• egonelbre / fm-index
  Educational implementation of BWT and FM-index
  ☆57Updated 6 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆108Updated last month
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆16Updated last month
• niemasd / CompactTree
  Lightweight header-only C++ library for loading and traversing trees
  ☆10Updated 3 months ago
• BioJulia / GenomeGraphs.jl
  A modern genomics framework for julia
  ☆69Updated 4 years ago
• mocherson / range-tree
  range tree for interval query
  ☆13Updated 5 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆33Updated last year
• Malfoy / BCALM
  de Bruijn CompAction in Low Memory
  ☆23Updated 8 years ago
• RagnarGrootKoerkamp / oxford-bioinformatics-template
  Improved version of the Oxford Bioinformatics paper template
  ☆12Updated 2 months ago
• largelymfs / DeepFold
  Learning structural motif representations for efficient protein structure search
  ☆18Updated 7 years ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆35Updated 10 months ago
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆83Updated last week
• davek44 / utility
  Computational biology utility scripts
  ☆19Updated 4 months ago
• tbrown91 / SimBac
  Source code for SimBac, a bacterial genome simulator
  ☆13Updated 2 months ago
• BioJulia / BioFmtSpecimens
  A collection of bioinformatics file format specimens to test against
  ☆40Updated 4 years ago
• MyersResearchGroup / iBioSim
  iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…
  ☆55Updated last year
• Kingsford-Group / miniception
  ☆12Updated 4 years ago
• GATB / bcalm
  compacted de Bruijn graph construction in low memory
  ☆99Updated last month
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 8 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 4 months ago
• whitehead / plaac
  Prion-Like Amino Acid Composition
  ☆15Updated last year