Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
☆24Dec 23, 2025Updated 5 months ago
Alternatives and similar repositories for transit
Users that are interested in transit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 3, 2017Updated 9 years ago
- A set of tools to analyse the output from TraDIS analyses☆24Aug 8, 2023Updated 2 years ago
- Python package for analyzing and visualizing iModulons☆15May 25, 2026Updated 2 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Convert a Genbank flat file to an NCBI ptt file☆17Aug 25, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Feb 29, 2024Updated 2 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- 'Pebble' is a family of themes for RStudio 1.2.x☆13Oct 6, 2023Updated 2 years ago
- ☆11Apr 17, 2025Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Five Letters is a challenging word puzzle game where you try to guess the secret five letter word.☆25Feb 17, 2024Updated 2 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- Automatic R pipeline for FGSEA and classic enrichment (GO, KEGG, Reactome, Hallmark)☆18Oct 30, 2025Updated 7 months ago
- Convert bioinformatics files to an emoji format.☆24Jul 15, 2023Updated 2 years ago
- A Microbiology-based Rogue-Like Game written in Lua via Love2D☆12Jul 24, 2021Updated 4 years ago
- Extendable Admin UI☆11Jun 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 9 months ago
- microbiome data simulation package☆22Oct 2, 2025Updated 8 months ago
- ☆12May 14, 2019Updated 7 years ago
- Phenotype and genotype-based patient similarity☆13Oct 2, 2025Updated 8 months ago
- DeepWAS: Directly integrating regulatory information into GWAS using machine learning☆18Mar 14, 2019Updated 7 years ago
- ☆14Dec 16, 2021Updated 4 years ago
- A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. …☆12Jul 13, 2025Updated 11 months ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- ☆10Dec 12, 2017Updated 8 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- Django implementation of WOPI server for Microsoft Office Online Server.☆12Feb 21, 2018Updated 8 years ago
- ☆17Nov 19, 2025Updated 6 months ago