tsynbio / AutoPELinks
β12Updated 7 months ago
Alternatives and similar repositories for AutoPE
Users that are interested in AutoPE are comparing it to the libraries listed below
Sorting:
- π Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modβ¦β24Updated 2 months ago
- The first 100B protein language model from biomapβ16Updated 4 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.β22Updated 5 months ago
- P450Diffusion: A tool for designing P450 sequences based on diffusion modelβ24Updated last year
- Pro-FSFP: Few-Shot Protein Fitness Predictionβ92Updated 2 months ago
- In-house inpainting pipeline (Rfdiffusion>ProteinMPNN>AF2)β16Updated 10 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraintsβ38Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",β¦β82Updated 2 months ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Modelsβ15Updated last year
- Code of βMulti-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sitesββ38Updated 5 months ago
- A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literatureβ52Updated last month
- The first large protein language model trained follows structure instructions.β84Updated 2 months ago
- β13Updated 3 weeks ago
- β77Updated 3 weeks ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.β66Updated 4 months ago
- β28Updated last year
- β19Updated 9 months ago
- PocketDTAβ30Updated 9 months ago
- Public Release of ProGen3 family of Modelsβ79Updated 3 weeks ago
- A model-context-protocol server for molecules.β79Updated 3 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.β60Updated last year
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational mβ¦β10Updated 3 years ago
- β37Updated 4 months ago
- Official repository of GENzymeβ53Updated 8 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocolβ32Updated 2 years ago
- β15Updated 5 months ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.β130Updated 3 weeks ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutationβ11Updated 7 months ago
- β17Updated last year
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Modelsβ29Updated 8 months ago