MadsAlbertsen / ampvisLinks
[deprecated] Please use ampvis2
☆8Updated 7 years ago
Alternatives and similar repositories for ampvis
Users that are interested in ampvis are comparing it to the libraries listed below
Sorting:
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- ☆14Updated 10 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- FUNGuild: parsing OTUs into functional guilds☆119Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆160Updated 2 years ago
- ☆49Updated 4 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆80Updated 3 years ago
- ☆76Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 4 months ago
- dada2 formatted nifH database☆12Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- EukRef curation pipeline☆13Updated 4 years ago
- Using ggtree to build phylogenetic trees☆47Updated 8 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆89Updated last year
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- ☆60Updated 5 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆42Updated 3 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆32Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- ☆12Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 8 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago