PyTom software for cryo-tomogram processing
☆45Jan 5, 2026Updated 2 months ago
Alternatives and similar repositories for PyTom
Users that are interested in PyTom are comparing it to the libraries listed below
Sorting:
- ☆17Oct 21, 2024Updated last year
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆21Mar 12, 2026Updated last week
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆43Mar 11, 2025Updated last year
- cryo-ET particle picking by representation and metric learning☆42Nov 24, 2025Updated 3 months ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆19Jul 28, 2023Updated 2 years ago
- ☆24Feb 26, 2026Updated 3 weeks ago
- ☆54Aug 19, 2024Updated last year
- Contextual Analysis Tools for cryoET and subtomogram averaging☆34Feb 10, 2026Updated last month
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Dec 1, 2025Updated 3 months ago
- A collaborative knowledge sharing platform for the cryo-ET community☆20Aug 7, 2024Updated last year
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- structural heterogeneity analysis for cryo-ET subtomogram☆10Feb 23, 2026Updated 3 weeks ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- Parallel cryo electron tomography via beam image shift☆40Feb 17, 2026Updated last month
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- membrane segmentation in 3D for cryo-ET☆88Feb 27, 2026Updated 3 weeks ago
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Jan 23, 2026Updated last month
- GPU-accelerated template matching for cryo-ET☆56Mar 6, 2026Updated 2 weeks ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- ☆10Feb 19, 2026Updated last month
- A CTF Simulation Web App☆13Aug 6, 2025Updated 7 months ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Aug 6, 2025Updated 7 months ago
- Self-supervised deep learning framework for CryoET analysis☆20Feb 18, 2026Updated last month
- Miscellaneous scripts for processing cryo-ET data☆21Feb 25, 2025Updated last year
- 3D-CTF correction for cryo-electron tomography☆28Nov 8, 2018Updated 7 years ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Nov 25, 2025Updated 3 months ago
- ☆19Updated this week
- Rapidly simulate realistic cryo-EM particles☆18May 18, 2023Updated 2 years ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Jun 29, 2025Updated 8 months ago
- ☆19Dec 22, 2025Updated 3 months ago
- A Matlab script for deconvolving the CTF in single micrographs/tomograms with a Wiener-like filter☆12Jun 26, 2019Updated 6 years ago
- Self-supervised learning for isotropic cryoET reconstruction☆90Dec 29, 2024Updated last year
- Cellular content mining and particle localization☆10Sep 21, 2025Updated 6 months ago
- cryolo documentation☆12Mar 5, 2026Updated 2 weeks ago
- Converts Dynamo tables to star files for coordinate import into RELION 4.0☆13Jul 25, 2023Updated 2 years ago
- PIP package of cryoCARE☆46Apr 2, 2024Updated last year
- ☆57May 14, 2024Updated last year
- ☆41Sep 4, 2025Updated 6 months ago
- These are programs that deal with anisotropy (both resolution and sampling)☆22Mar 16, 2018Updated 8 years ago