PyTorch implementations of protein secondary structure prediction on CB513.
☆17Dec 30, 2018Updated 7 years ago
Alternatives and similar repositories for protein-secondary-structure-prediction
Users that are interested in protein-secondary-structure-prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository is for the replication of our published paper "Protein Secondary Structure Prediction Using Cascaded Convolutional and Re…☆13Nov 10, 2017Updated 8 years ago
- CB513 results (world record)☆29Nov 13, 2016Updated 9 years ago
- ☆26Dec 8, 2022Updated 3 years ago
- Implementation of IJCAI15 cascade cnn and LSTM for protein secondary structure prediction☆37May 21, 2017Updated 9 years ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 4 years ago
- Protein Secondary Structure predictor using Convolutional Neural Networks☆113Apr 14, 2026Updated 2 months ago
- Protein contacts prediction using deep learning models☆79Jul 16, 2019Updated 6 years ago
- Variational autoencoder implementation in tensorflow following the classic paper by Kingma and Welling.☆13Jul 12, 2017Updated 8 years ago
- Extract ligands from original PDB file☆10Nov 1, 2019Updated 6 years ago
- The database and API backend for ZincBind - the database of zinc binding sites☆16Apr 8, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Training Conditional Random Fields (CRF) by Maximizing Area Under the ROC Curve (AUC)☆12Apr 12, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Linear-chain LSTM-CRFs and Convolutional CRFs in PyTorch.☆22Aug 11, 2017Updated 8 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated last year
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Secondary Protein Structure Prediction using Neural Networks and Deep Learning .☆10Jul 17, 2022Updated 3 years ago
- Overview of published generative models that produce molecules☆16Jan 16, 2020Updated 6 years ago
- Multitask learning: protein secondary structure prediction, b-values prediction and solvent-accessibility prediction☆24Aug 23, 2018Updated 7 years ago
- A PyTorch framework for prediction of tertiary protein structure☆193Jun 8, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predicting protein subcellular localization using deep learning☆16Sep 13, 2019Updated 6 years ago
- Implementation of High Quality Protein Q8 Secondary Structure Prediction by Diverse Neural Network Architectures☆22May 9, 2019Updated 7 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 7 months ago
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- detection of glomeruli using faster rcnn☆11Nov 22, 2019Updated 6 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- A Python workflow to study protein-protein coevolution and interaction☆21Jun 30, 2017Updated 8 years ago
- Multiobjective De Novo Drug Design with Recurrent Neural Networks and Nondominated Sorting☆18Jan 20, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Generate A3M and TGT file from a given sequence in FASTA format.☆11Nov 16, 2020Updated 5 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- Predict protein local properties using sequence or profile information.☆23Nov 16, 2020Updated 5 years ago
- ☆52Jul 23, 2020Updated 5 years ago
- ☆11Jun 5, 2021Updated 5 years ago
- Prediction of protein contact map☆20Feb 2, 2021Updated 5 years ago
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆20Jan 14, 2019Updated 7 years ago