PyTorch implementations of protein secondary structure prediction on CB513.
☆17Dec 30, 2018Updated 7 years ago
Alternatives and similar repositories for protein-secondary-structure-prediction
Users that are interested in protein-secondary-structure-prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository is for the replication of our published paper "Protein Secondary Structure Prediction Using Cascaded Convolutional and Re…☆13Nov 10, 2017Updated 8 years ago
- CB513 datasets for Protein Secondary Structure Prediction☆12Apr 3, 2025Updated last year
- ☆26Dec 8, 2022Updated 3 years ago
- Implementation of IJCAI15 cascade cnn and LSTM for protein secondary structure prediction☆37May 21, 2017Updated 8 years ago
- 天池蛋白质结构预测大赛 排名3/241☆19Jan 25, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 2020天池大赛，蛋白质结构预测大赛TOP1方案分享☆104May 21, 2020Updated 5 years ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 4 years ago
- Protein Secondary Structure predictor using Convolutional Neural Networks☆113Updated this week
- Protein contacts prediction using deep learning models☆78Jul 16, 2019Updated 6 years ago
- Variational autoencoder implementation in tensorflow following the classic paper by Kingma and Welling.☆13Jul 12, 2017Updated 8 years ago
- The database and API backend for ZincBind - the database of zinc binding sites☆16Apr 8, 2025Updated last year
- Training Conditional Random Fields (CRF) by Maximizing Area Under the ROC Curve (AUC)☆12Apr 12, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast Genetic Programming☆11Oct 10, 2019Updated 6 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- Semi-Supervised Regression☆12Jul 19, 2019Updated 6 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆29May 26, 2025Updated 10 months ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Secondary Protein Structure Prediction using Neural Networks and Deep Learning .☆10Jul 17, 2022Updated 3 years ago
- Generation of new putative Mdmx inhibitors from scratch based on Recurrent Neural Networks and molecular docking.☆10Jun 27, 2019Updated 6 years ago
- Multitask learning: protein secondary structure prediction, b-values prediction and solvent-accessibility prediction☆24Aug 23, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A PyTorch framework for prediction of tertiary protein structure☆193Jun 8, 2021Updated 4 years ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 5 months ago
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 5 years ago
- Generate A3M and TGT file from a given sequence in FASTA format.☆11Nov 16, 2020Updated 5 years ago
- A Python workflow to study protein-protein coevolution and interaction☆21Jun 30, 2017Updated 8 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 6 years ago
- Multiobjective De Novo Drug Design with Recurrent Neural Networks and Nondominated Sorting☆18Jan 20, 2020Updated 6 years ago
- ☆52Jul 23, 2020Updated 5 years ago
- Prediction of protein contact map☆20Feb 2, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 9 months ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- ☆11May 7, 2021Updated 4 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- ☆14Aug 10, 2025Updated 8 months ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆59Oct 17, 2022Updated 3 years ago
- Extract structural features from original PDB file☆25Jul 14, 2020Updated 5 years ago