dsi-icl / biobank-readLinks
Python for UK Biobank data analysis
☆10Updated last year
Alternatives and similar repositories for biobank-read
Users that are interested in biobank-read are comparing it to the libraries listed below
Sorting:
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆26Updated 4 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated last month
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆56Updated 2 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆65Updated 2 years ago
- R package for UK Biobank data wrangling.☆21Updated last year
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆38Updated 2 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆13Updated 2 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Updated 3 years ago
- Prepare UK Biobank Electronic Health Record data for research☆30Updated 3 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆41Updated 4 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆24Updated 7 years ago
- queries for mimic-iv☆11Updated 4 years ago
- Helper functions for UK Biobank data☆12Updated 4 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆50Updated last year
- An R package to manipulate and explore UK Biobank data☆108Updated 2 years ago
- An R package for generating analysis-ready data from laboratory records☆15Updated 2 years ago
- ☆158Updated last week
- ☆14Updated 9 months ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆43Updated last week
- pyebm - A toolbox for Event Based Models☆27Updated 3 years ago
- Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries☆11Updated 10 months ago
- AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator☆34Updated last week
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29Updated 4 years ago
- ETL UK-Biobank☆16Updated 3 years ago
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆12Updated 5 years ago
- Code snippets for use in All of Us Workbench notebooks.☆18Updated 2 years ago
- Mixed Effect Machine Learning☆10Updated 5 years ago
- For this project, I used publicly available Electronic Health Records (EHRs) datasets. The MIT Media Lab for Computational Physiology has…☆18Updated last year