kaczmarj / HIPPOLinks
HIPPO π¦ is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing on tissue and searching for high-effect and low-effect tissue regions.
β14Updated 6 months ago
Alternatives and similar repositories for HIPPO
Users that are interested in HIPPO are comparing it to the libraries listed below
Sorting:
- Inference code for HoVer-NeXtβ37Updated 4 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cellβ102Updated 6 months ago
- Histopathology Slides Preprocessing Pipelineβ42Updated 4 months ago
- MADELEINE: multi-stain slide representation learning (ECCV'24)β58Updated 5 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024β105Updated 9 months ago
- Standardized benchmark for computational pathology foundation models.β92Updated this week
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentationβ54Updated 3 years ago
- GPU-accelerated stain normalization command line toolβ22Updated last year
- β21Updated last year
- Solid Tumor Associative Modeling in Pathologyβ82Updated this week
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.β25Updated last year
- Python 3 library for the augmentation & normalization of H&E imagesβ58Updated 2 years ago
- Hibou: Foundational Models for Pathologyβ74Updated 9 months ago
- π₯ π Blazingly fast pipeline for patch-based classification in whole slide imagesβ75Updated last year
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) claβ¦β66Updated 2 years ago
- β138Updated 2 weeks ago
- Training/Evaluation code for HoVer-NeXtβ14Updated 7 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineeringβ107Updated 2 years ago
- Encoder-Decoder Cell and Nuclei segmentation modelsβ92Updated 2 weeks ago
- β41Updated 3 years ago
- β14Updated last year
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasetsβ88Updated 2 years ago
- Image-translation-assisted segmentation in 3Dβ26Updated 3 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.β30Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)β80Updated last year
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023β105Updated 2 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Medβ¦β157Updated last year
- β35Updated 2 years ago
- A vision language model for gigapixel whole slide images in histopathologyβ69Updated last month
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024β138Updated 5 months ago