HIPPO 🦛 is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing on tissue and searching for high-effect and low-effect tissue regions.
☆19Jan 15, 2025Updated last year
Alternatives and similar repositories for HIPPO
Users that are interested in HIPPO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Benchmarking toolkit for patch-based histopathology image classification.☆44Jun 2, 2023Updated 3 years ago
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆22Oct 1, 2025Updated 9 months ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆81Feb 4, 2025Updated last year
- Repository for "Gigapixel Whole-Slide Images Classification using Locally Supervised Learning" (MICCAI 2022)☆28Sep 26, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Benchmark for pathology foundation models robustness to non-biological medical center differences.☆31Apr 2, 2026Updated 3 months ago
- ☆22Jan 6, 2026Updated 6 months ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 5 years ago
- Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning☆12Nov 29, 2023Updated 2 years ago
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆120Jun 19, 2023Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆120Jan 24, 2025Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆74Nov 21, 2022Updated 3 years ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆153Feb 5, 2026Updated 5 months ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30May 21, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆21Updated this week
- Pseudo-Bag Mixup Augmentation for Multiple Instance Learning-Based Whole Slide Image Classification (IEEE TMI 2024)☆70Mar 17, 2025Updated last year
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated 2 years ago
- HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇☆23Feb 29, 2024Updated 2 years ago
- Federated Learning for Computational Pathology - Medical Image Analysis☆49Feb 9, 2022Updated 4 years ago
- ☆45Jan 10, 2022Updated 4 years ago
- Variance pooling to incorporate ITH in CPath models - MICCAI 2022☆26Sep 27, 2022Updated 3 years ago
- Interactive Segmentation of Nucleus☆68Nov 22, 2022Updated 3 years ago
- Image-translation-assisted segmentation in 3D☆28Mar 14, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- [MICCAI 2024 🔥] HLSS, the first study to explore hierarchical information inherent in histopathology images and their language descripti…☆27Aug 5, 2024Updated last year
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆27Dec 5, 2022Updated 3 years ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆116Oct 15, 2024Updated last year
- Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PL…☆381Sep 20, 2023Updated 2 years ago
- ☆32Nov 1, 2022Updated 3 years ago
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN),图神经网络(GNN),NLP,大数据相关的发展路书(roadmap), 并附海量源码(python,pytorch)带大家消化基本知识点,突破面试,完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- ☆18Apr 8, 2025Updated last year
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆67Feb 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 4 months ago
- Instance-based Vision Transformer for Subtyping of Papillary Renal Cell Carcinoma in Histopathological Image-MICCAI 2021☆15Dec 26, 2023Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆125Jul 7, 2026Updated 2 weeks ago
- Demographic bias in misdiagnosis by computational pathology models - Nature Medicine☆15Apr 29, 2024Updated 2 years ago
- ☆19Oct 12, 2022Updated 3 years ago
- Multiscale Image Restoration for fluorescence microscopy☆10Jun 17, 2023Updated 3 years ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆54Feb 2, 2024Updated 2 years ago