Report templates and helper functions for applied epidemiology
☆45Feb 25, 2026Updated 2 months ago
Alternatives and similar repositories for sitrep
Users that are interested in sitrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CRAN Task View: Epidemiology☆23Mar 17, 2026Updated last month
- An R package to import, clean, and store case data☆25Dec 9, 2022Updated 3 years ago
- Small Helpers and Tricks for Epidemics Analysis☆11Sep 20, 2023Updated 2 years ago
- RECON learn: a free, open platform for training material on epidemics analysis☆36Aug 1, 2022Updated 3 years ago
- Convert dates to arbitrary week definitions☆17Oct 6, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R Package - Dynamical Systems Approach to Infectious Disease Epidemiology☆26Jan 22, 2024Updated 2 years ago
- An R package for simulating line lists☆10Apr 15, 2026Updated 2 weeks ago
- access to geographic locations of african health sites from different sources☆32Jun 9, 2021Updated 4 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Dec 22, 2021Updated 4 years ago
- Utility provides a more meaningful measure of forecast skill than goodness-of-fit☆18Apr 26, 2022Updated 4 years ago
- R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series☆14Jan 1, 2026Updated 4 months ago
- tidytrees: a package for a tidy representation of decision trees.☆12May 20, 2021Updated 4 years ago
- A collection of htmlwidgets handy for epidemiology, etc.☆13Jul 5, 2015Updated 10 years ago
- [work-in-progress] Curated list of HFOSS (Humanitarian Free and Open Source Software) who are very welcome to external developers contrib…☆13Mar 8, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆53May 16, 2025Updated 11 months ago
- Age pyramid construction and plotting☆20Feb 14, 2023Updated 3 years ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Mar 25, 2026Updated last month
- R functions to upload, share xlsform and also download data from https://kobo.humanitarianresponse.info/ using new KoBo API (KPI) and als…☆14Jul 19, 2019Updated 6 years ago
- Source code for the EpiEstim app.☆35Aug 7, 2025Updated 8 months ago
- R Package of methods and data for spatial epidemiology☆34Feb 22, 2023Updated 3 years ago
- Repository for the R for Epidemiology book☆30Dec 31, 2025Updated 4 months ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Open Data Kit R API☆11Jan 26, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package containing useful functions for the analysis of movement data in disease modelling and mapping☆21Apr 13, 2023Updated 3 years ago
- ☣ Risk assessment of travel-related disease spread☆19Mar 9, 2026Updated last month
- Analysing epidemic trends using AutoML approaches.☆19Apr 23, 2021Updated 5 years ago
- Community-driven COVID-19 analytics in R☆58Apr 3, 2020Updated 6 years ago
- Handling, Visualisation and Analysis of Epidemiological Contacts☆17Apr 17, 2025Updated last year
- R packages to extract data from the https://kc.humanitarianresponse.info/ using API, recode and aggregate survey data. The library is bui…☆13Aug 21, 2019Updated 6 years ago
- ☆14Oct 20, 2023Updated 2 years ago
- SEIR+ model☆20Jul 25, 2025Updated 9 months ago
- Class materials for a workshop at Karolinska Institute☆13Oct 5, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago
- Pre-alpha {targets} workshop☆36Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆37Updated this week
- Tools for constructing and plotting Markov Random Fields in R for graphical data☆24Apr 24, 2026Updated last week
- Molecular Epidemiology of Viruses in R☆20Sep 24, 2015Updated 10 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated last year