Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975
☆15May 7, 2020Updated 6 years ago
Alternatives and similar repositories for HP3
Users that are interested in HP3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 27, 2020Updated 6 years ago
- ☆14Apr 28, 2019Updated 7 years ago
- Personal web site, "Tea & Stats", built with blogdown and Hugo. Check 'source' branch!☆18Mar 18, 2025Updated last year
- Mini-workshop materials for doing geospatial analysis with the sf package☆11Apr 26, 2017Updated 9 years ago
- CloudedBats.org - main repository☆12Mar 19, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- an R package for generating and working with codemeta☆67Feb 10, 2026Updated 4 months ago
- My directory of R packages for data analysis and visualization, Bayesian statistics, mapping, GIS, climate, Species Distribution Modellin…☆17Oct 3, 2019Updated 6 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- Code for Biodiversidata Project☆15Oct 18, 2024Updated last year
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- R Interface to Apache Tika☆55Oct 12, 2025Updated 8 months ago
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- KoBo Toolbox offers a convenient way to collect data using web and mobile forms. This package facilitates the retrieval of data entered u…☆14Mar 9, 2016Updated 10 years ago
- Communicating with R Markdown workshop☆17Oct 4, 2019Updated 6 years ago
- Material for a workshop on reproducible science with R and RStudio☆15May 22, 2022Updated 4 years ago
- Repository for useR! 2021 TileDB Tutorial Helper Package☆12Aug 4, 2021Updated 4 years ago
- A separate repo for first pomdp paper (AmNat)☆16Apr 27, 2021Updated 5 years ago
- OSS2017 - Open Science for Synthesis: Gulf Research Program☆10May 12, 2019Updated 7 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- Use 'magic' to guess file types☆19Nov 7, 2020Updated 5 years ago
- A web application to unlock primary biodiversity data from published literature☆14Mar 3, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jun 11, 2026Updated last week
- Lesson materials for OSS 2017 data science curriculum☆19May 12, 2019Updated 7 years ago
- Files for a minimal 'reproducible' PhD thesis☆11May 11, 2020Updated 6 years ago
- Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems☆16Sep 2, 2022Updated 3 years ago
- An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)☆14Jan 15, 2025Updated last year
- ❄️🐻 Climate change and cross-species viral transmission☆13Apr 15, 2022Updated 4 years ago
- Four-in-one value pack of host-virus association data☆27Jun 30, 2022Updated 3 years ago
- because projects and ideas sometimes need a little love☆14Apr 3, 2020Updated 6 years ago
- ®️ errors, in emoji☆14May 31, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Slides of my introduction to the Tidyverse☆16Oct 22, 2020Updated 5 years ago
- Stacked Species Distribution Modelling R package☆49Apr 11, 2025Updated last year
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- Global land-use and land-cover (LULC) data under historical, current, and future climatic conditions.☆10Jun 21, 2023Updated 2 years ago
- A simple class for storing UTF-8 strings☆16Jan 24, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- US Wildfire Dashboard☆16Apr 3, 2023Updated 3 years ago