Alternatives and similar repositories for boostdiff_inference

Users that are interested in boostdiff_inference are comparing it to the libraries listed below

• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆42Updated 3 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 11 months ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆34Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆33Updated 2 years ago
• hyochoi / SCISSOR
  Shape Changes In Selecting Sample Outliers in RNA-seq
  ☆12Updated 3 years ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆29Updated 3 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆45Updated last week
• songlab-cal / scquint
  ☆18Updated last year
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆18Updated last month
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 5 years ago
• zsq-berry / 3D-genome-tools
  ☆12Updated 3 years ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆36Updated last month
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆45Updated last month
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆42Updated 2 years ago
• Genentech / Isosceles
  The Isoforms from Single-Cell; Long-read Expression Suite
  ☆37Updated last year
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆27Updated 4 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 4 months ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆30Updated 2 years ago
• plasslab / SCALPEL
  Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
  ☆31Updated 3 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆16Updated 5 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆35Updated last year
• gagneurlab / absplice
  ☆39Updated 7 months ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated last year
• Xinglab / rMATS-long
  ☆34Updated 2 months ago