BoostDiff - Inference of differential networks from gene expression data
☆13Jan 11, 2024Updated 2 years ago
Alternatives and similar repositories for boostdiff_inference
Users that are interested in boostdiff_inference are comparing it to the libraries listed below
Sorting:
- Identification and Classification of the Most Influential Nodes☆28Mar 12, 2026Updated last week
- Beeswarm plots for python☆34Nov 2, 2015Updated 10 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Feb 12, 2018Updated 8 years ago
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics☆10Mar 11, 2022Updated 4 years ago
- R package IReNA☆29Nov 13, 2024Updated last year
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations☆24Dec 17, 2021Updated 4 years ago
- Colour and fill scales for 'ggplot2' using colour spaces.☆15Feb 24, 2021Updated 5 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- PyTorch implements `Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning` paper.☆14Aug 19, 2022Updated 3 years ago
- LaTeX service☆10Jul 1, 2015Updated 10 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- ☆17Aug 4, 2024Updated last year
- Ligand-Receptor docking with AutoDock Vina☆12Mar 21, 2024Updated last year
- Code to build models that effectively predict promoter-driven gene expression☆11May 15, 2025Updated 10 months ago
- A cool tone scheme for VIM☆10Apr 5, 2017Updated 8 years ago
- Studying Cell Growth with Neural Cellular Automata☆14May 24, 2022Updated 3 years ago
- ☆11Jul 31, 2019Updated 6 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 2 years ago
- Calculate how many points are within a radius using Leaflet☆12Jun 24, 2015Updated 10 years ago
- ☆10May 17, 2022Updated 3 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated this week
- Gene Neural Network (GNN)☆11Oct 5, 2019Updated 6 years ago
- SHApe simulation with graph KERnels☆11May 17, 2021Updated 4 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- Writing a custom connection for R☆16May 15, 2025Updated 10 months ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Bivariate Shapley is a Shapley-based method of identifying directional feature interactions and feature redundancy☆20May 19, 2025Updated 10 months ago
- Python implementation of closed frequent subgraph mining algorithm cgSpan. Only undirected graphs are currently supported.☆13Dec 20, 2021Updated 4 years ago
- Calculate voronoi-style polygons based on route distances / durations☆12Apr 16, 2025Updated 11 months ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆23Feb 23, 2026Updated 3 weeks ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆14Jun 6, 2024Updated last year
- A PHP 5.3+ wrapper to the NCBI/PubMed efetch API☆12Oct 14, 2020Updated 5 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 5 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 4 years ago
- ☆10Aug 11, 2023Updated 2 years ago