schuetzgroup / sdt-pythonLinks
Python library for fluorescence microscopy data anlysis
☆54Updated this week
Alternatives and similar repositories for sdt-python
Users that are interested in sdt-python are comparing it to the libraries listed below
Sorting:
- elastic fda python code☆53Updated 2 months ago
- Utilities for formatting matplotlib figures☆31Updated 6 months ago
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆91Updated 10 months ago
- Load MATLAB 7.3 .mat files. I.e. load hdf5 into Python datatypes.☆169Updated 3 months ago
- A Biological Oscillations Analysis Toolkit☆20Updated 3 months ago
- NeuroData's package for exploring and using progressive learning algorithms☆38Updated 5 months ago
- Python package providing mesoscale connectivity models for mouse.☆39Updated last year
- ☆42Updated 3 months ago
- Trend Filter Denoising☆21Updated 4 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated last month
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆31Updated last month
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- CloudReg☆11Updated last year
- Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.☆18Updated 5 years ago
- Napari plugin for working with video files.☆13Updated 3 weeks ago
- Modular and scalable computational imaging in Python with GPU/out-of-core computing.☆138Updated 5 months ago
- Block-wise task scheduling for large nD volumes.☆32Updated 5 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- GPU-based 3D non-rigid volumetric registration☆41Updated 2 weeks ago
- ☆29Updated 2 years ago
- Implementation of Low Distortion Local Eigenmaps and several variations of it☆18Updated 10 months ago
- Read Becker & Hickl SDT files.☆13Updated 3 months ago
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆208Updated this week
- The framework for inferring Langevin dynamics from spike data☆42Updated 3 months ago
- ☆34Updated 3 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆136Updated this week
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆14Updated last year
- Multiple hypothesis testing in Python☆110Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 8 months ago