schuetzgroup / sdt-python
Python library for fluorescence microscopy data anlysis
☆51Updated 3 months ago
Alternatives and similar repositories for sdt-python:
Users that are interested in sdt-python are comparing it to the libraries listed below
- Creating figures and animations for multi-channel images with a focus on microscopy.☆70Updated last month
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆74Updated this week
- A napari plugin for clustering objects according to their properties.☆81Updated 3 weeks ago
- website for the napari image viewer☆44Updated this week
- Linking napari layers with Matplotlib plots☆40Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆38Updated 6 months ago
- Track and lineage visualization with btrack and Napari☆44Updated 3 months ago
- ☆17Updated 2 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆142Updated 3 weeks ago
- ☆20Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆129Updated 4 months ago
- A napari plugin for making animations☆81Updated 4 months ago
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆85Updated 3 months ago
- Modular and scalable computational imaging in Python with GPU/out-of-core computing.☆127Updated 2 months ago
- A python library for advanced lattice light-sheet image analysis☆21Updated 4 years ago
- A self-supervised denoising algorithm.☆24Updated 9 months ago
- Particle tracking by solving linear assignment problem.☆49Updated 3 weeks ago
- Utilities for formatting matplotlib figures☆27Updated 3 years ago
- Resources for teaching/preparing to teach bioimage analysis☆52Updated this week
- Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.☆15Updated 4 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆38Updated last month
- Course material for fundamentals in digital image processing☆20Updated 5 years ago
- NeuroData's package for exploring and using progressive learning algorithms☆36Updated 3 months ago
- This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accur…☆99Updated last year
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆24Updated last month
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆71Updated 3 months ago
- A collection of tools for painting super-resolution images☆111Updated last month
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 3 months ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated last week
- Discover, install, and share napari plugins☆51Updated this week