⛔️ DEPRECATED Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
☆44Mar 27, 2026Updated 3 months ago
Alternatives and similar repositories for irida
Users that are interested in irida are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The MLST pipeline developed by the PathOGiST research group☆38Nov 29, 2023Updated 2 years ago
- Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML☆16Jun 12, 2026Updated last month
- IRIDA Next☆15Updated this week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated last month
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆55May 25, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 2 weeks ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 4 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆203Jun 10, 2026Updated last month
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆21Oct 8, 2025Updated 9 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- A Python package to update the MLST database for the mlst tool.☆29Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 3 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- ASMNGS18 - 2018 Conference Details☆12Oct 3, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Apr 4, 2023Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆64Sep 23, 2025Updated 10 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Awesome resources related to Galaxy project☆11Jul 6, 2026Updated 2 weeks ago
- ☆10Apr 16, 2025Updated last year
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 7 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bluetooth Internet Adapter is an idea for a solution allowing Personal Computers to access Internet content via Bluetooth connection to a…☆15Apr 12, 2010Updated 16 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated last month
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆149Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated last month