ne1s0n / coding_excercisesLinks
A public repo for slides and exercise for the "Introduction to deep learning for biologists" Physalia course, by Nelson Nazzicari and Filippo Biscarini
☆22Updated 3 weeks ago
Alternatives and similar repositories for coding_excercises
Users that are interested in coding_excercises are comparing it to the libraries listed below
Sorting:
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago
- ☆15Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- ☆35Updated 2 years ago
- ☆28Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Micro 612 genomics workshop☆38Updated 4 years ago
- my bin directory☆45Updated 3 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Metagenomics Workshop☆28Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ☆23Updated 7 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 5 years ago
- An R package designed for drawing gene arrow maps☆92Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 11 months ago