ne1s0n / coding_excercisesLinks
A public repo for slides and exercise for the "Introduction to deep learning for biologists" Physalia course, by Nelson Nazzicari and Filippo Biscarini
☆24Updated 2 months ago
Alternatives and similar repositories for coding_excercises
Users that are interested in coding_excercises are comparing it to the libraries listed below
Sorting:
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last week
- ☆28Updated 5 years ago
- ☆34Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- Micro 612 genomics workshop☆38Updated 4 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 2 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆37Updated 6 months ago
- my bin directory☆45Updated 5 months ago
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆67Updated last year
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last month
- CRyPTIC data processing pipelines☆34Updated last year
- ☆36Updated 8 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38Updated last year
- Pangenome analysis of eukaryotes.☆21Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- k-mer learning materials☆83Updated 11 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- ☆35Updated 5 years ago