msultan / vde_metadynamics
Enhanced protein mutational sampling using time-lagged variational autoencoders
☆29Updated 6 years ago
Alternatives and similar repositories for vde_metadynamics:
Users that are interested in vde_metadynamics are comparing it to the libraries listed below
- ☆12Updated 4 years ago
- ☆69Updated 2 years ago
- Population-based De Novo Molecule Generation, Using Grammatical Evolution☆41Updated 3 years ago
- ☆21Updated 5 years ago
- Graph-based generative model☆24Updated 6 years ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆52Updated 9 months ago
- A collection of small scripts and utilities that would otherwise float around in other repositories☆13Updated 2 years ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated last month
- ☆43Updated 3 years ago
- Message Passing Neural Networks for Molecule Property Prediction☆24Updated 4 years ago
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆33Updated 2 years ago
- Implementation of the method proposed in the paper "Efficient Multi-Objective Molecular Optimization in a Continuous Latent Space" by Rob…☆76Updated 3 years ago
- rid☆20Updated 3 years ago
- Calculation of water/solvent partition coefficients with Gromacs.☆26Updated 4 months ago
- ☆44Updated 4 years ago
- Challenge details, inputs, and results for the SAMPL7 series of challenges☆46Updated 3 years ago
- ☆36Updated 3 years ago
- ☆31Updated 6 years ago
- Python 3 fork for the preparation scripts contained in AutoDockTools☆20Updated 3 years ago
- Supporting code for the paper «Generative molecular design in low data regimes»☆65Updated 3 years ago
- An End-to-End Framework for Molecular Conformation Generation via Bilevel Programming (ICML'21)☆51Updated 3 years ago
- Yet another ML method comparison☆17Updated 2 years ago
- An E(3) Equivariant Variational Autoencoder for Molecular Linker Design☆46Updated 2 years ago
- Molecular docking with Alchemical Interaction Grids☆26Updated last week
- ☆49Updated 7 years ago
- Software tools for fragment-based drug discovery (FBDD)☆27Updated 4 years ago
- https://arxiv.org/abs/2102.11439☆20Updated 3 years ago
- eMolFrag is a molecular fragmentation tool based on BRICS algorithm written in Python.☆49Updated 4 years ago
- Molecular Property Prediction using GP with a SOAP kernel☆21Updated 4 years ago
- Source code and input files associated to the paper "Targeted free energy perturbation revisited: Accurate free energies from mapped refe…☆13Updated 3 years ago