Tool for computation of the minimal coverage depth for given variant allele frequency and probability of sequencing error.
☆12Aug 24, 2020Updated 6 years ago
Alternatives and similar repositories for olgen-coverage-limit
Users that are interested in olgen-coverage-limit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jun 14, 2023Updated 3 years ago
- ☆13Dec 7, 2021Updated 4 years ago
- A fork of Mini vMac 36.04 (https://www.gryphel.com/c/minivmac/index.html) that focuses on SDL 2 and Emscripten.☆15Nov 6, 2018Updated 7 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆83Jun 30, 2025Updated last year
- Oncogenicity Variant Interpreter for somatic variants☆16Sep 8, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Whole genome sequencing analysis pipeline for consumer hardware. 100% local, Docker-powered, free and open source.☆21Updated this week
- Bycon - A Python Based Beacon API (beacon-project.io) implementation leveraging the Progenetix (progenetix.org) data model☆10May 12, 2026Updated 5 months ago
- Python bindings for the Unitex/GramLab corpus processor☆10Nov 25, 2022Updated 3 years ago
- Easily GPU accelerate essential genomics analysis workflows, such as Germline, by using NVIDIA Parabricks.☆14May 8, 2026Updated 5 months ago
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- Conveniently process a dictionary of anndatas☆24Sep 25, 2026Updated 3 weeks ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 4 years ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Jul 14, 2026Updated 3 months ago
- An automatic classification tool for PVS1 interpretation of null variants☆47Mar 4, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆26Apr 5, 2023Updated 3 years ago
- Single-cell analysis methods in Rust☆36Jun 26, 2026Updated 3 months ago
- The R package for SVM with GPU architecture based on the GTSVM software☆32Aug 4, 2021Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆31Apr 23, 2024Updated 2 years ago
- ☆18Aug 29, 2025Updated last year
- ☆15Apr 20, 2023Updated 3 years ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆18Oct 13, 2026Updated last week
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A documentation for FAIR GPT, a virtual RDM consultant☆17Oct 10, 2024Updated 2 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆19Sep 30, 2026Updated 3 weeks ago
- ☆31Aug 4, 2023Updated 3 years ago
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 3 years ago
- argparse to Markdown for your README.md!☆17Dec 2, 2021Updated 4 years ago
- Web interface that allows users to perform computer-assisted text annotation☆14Jan 19, 2023Updated 3 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆54Updated this week
- Functional and structural analysis of tables in research papers (Table disentangling)☆21Aug 7, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment☆24Updated this week
- High-performance UMI tools for NGS data analysis☆61Updated this week
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆18Updated this week
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- Workflow for viral analysis guided by reference☆16Oct 9, 2026Updated 2 weeks ago
- R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of ca…☆12Aug 29, 2025Updated last year
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago