Alternatives and similar repositories for biothings_explorer_archived

Users that are interested in biothings_explorer_archived are comparing it to the libraries listed below

• biocommons / eutils
  simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
  ☆63Updated 2 months ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated last week
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆136Updated this week
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 8 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆26Updated last year
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 4 months ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆81Updated 3 weeks ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆60Updated last week
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 4 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 7 months ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated last week
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆15Updated this week
• gawbul / pyEnsemblRest
  A client for the Ensembl REST API written in the Python programming language
  ☆27Updated 4 months ago
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 5 years ago
• MaayanLab / FAIRshake
  ☆10Updated 2 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 4 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆26Updated 4 years ago
• NCIP / pathway-interaction-database
  The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and …
  ☆15Updated 9 years ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated this week
• elixir-europe / BioHackathon-projects-2019
  This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…
  ☆24Updated 4 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 3 years ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆19Updated 6 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• Rothamsted / knetminer
  KnetMiner - webapp to search and visualize genome-scale knowledge graphs
  ☆29Updated last month