Alternatives and similar repositories for biothings_explorer_archived

Users that are interested in biothings_explorer_archived are comparing it to the libraries listed below

• biocommons / eutils
  simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
  ☆63Updated 2 weeks ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated this week
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆27Updated last year
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 3 years ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆62Updated last week
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆82Updated last month
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated last year
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated this week
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated this week
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆33Updated 8 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 5 months ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆138Updated this week
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆22Updated last month
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆15Updated last month
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 4 years ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 8 months ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 5 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆150Updated 9 months ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 5 months ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 9 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆45Updated last week
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago
• cancervariants / metakb
  Central repository for the VICC metakb web application
  ☆15Updated last week
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 5 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆49Updated 2 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 3 years ago
• MachineLearning-ELIXIR / dome-ml
  ☆22Updated 4 years ago