Alternatives and similar repositories for ibex

Users that are interested in ibex are comparing it to the libraries listed below

• smiles724 / PeptideDesign
  ☆36Updated 2 months ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆73Updated 10 months ago
• lamm-mit / ProteinMechanicsDiffusionDesign
  ☆27Updated 2 years ago
• ProteinDesignLab / caliby
  Potts model-based protein sequence design
  ☆80Updated 3 weeks ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 7 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• rneeser / LatentFrag
  Structure-based fragment identification in latent space
  ☆28Updated 8 months ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated 3 weeks ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆55Updated 5 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆53Updated 6 months ago
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆118Updated last week
• graeter-group / flips
  Flexibility-conditioned protein structure design
  ☆32Updated 7 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆69Updated 9 months ago
• feiglab / idpgan
  ☆51Updated last year
• csi-greifflab / developability_profiling
  ☆28Updated 5 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆41Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆53Updated 2 weeks ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 8 months ago
• sokrypton / af2bind
  ☆54Updated 2 months ago
• BioinfoMachineLearning / GCPNet
  A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)
  ☆52Updated 9 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆74Updated 10 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• KULL-Centre / _2023_Tesei_IDRome
  ☆47Updated 9 months ago
• gwlilabmit / FragFold
  Fragment binding prediction with ColabFold
  ☆41Updated 3 months ago