Alternatives and similar repositories for ibex

Users that are interested in ibex are comparing it to the libraries listed below

• smiles724 / PeptideDesign
  ☆30Updated 3 months ago
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆14Updated 3 months ago
• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆18Updated last year
• KrishnaswamyLab / ImmunoStruct
  ImmunoStruct: a multimodal neural network framework for immunogenicity prediction from peptide-MHC sequence, structure, and biochemical p…
  ☆12Updated 4 months ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated 2 weeks ago
• svats73 / mdml
  mdml: Deep Learning for Molecular Simulations
  ☆47Updated 4 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• feiglab / idpgan
  ☆49Updated 9 months ago
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆37Updated 6 months ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆66Updated 6 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆32Updated last year
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated last week
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 6 months ago
• csi-greifflab / developability_profiling
  ☆25Updated last month
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 3 years ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆79Updated 7 months ago
• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆16Updated 2 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆47Updated 2 months ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• lamm-mit / ProteinMechanicsDiffusionDesign
  ☆27Updated last year
• AaronFeller / PeptideCLM
  ☆25Updated 6 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆33Updated 2 years ago
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆100Updated last week
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆74Updated 2 weeks ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated this week
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆23Updated last month
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆53Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 months ago