MaayanLab / appyter-catalog
A catalog of appyter notebooks
☆32Updated last month
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- Explore and download data from the recount3 project☆31Updated 4 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- A simple pythonic interface to biomart.☆54Updated 4 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆21Updated last week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆47Updated 6 months ago
- Functional Associations using Variational Autoencoders☆36Updated last month
- Shiny app for making and annotating Volcano plots☆20Updated 3 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆40Updated last month
- bioinformatics plotting and tools☆52Updated 3 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- Multi-omics studies are available here☆50Updated 2 years ago
- Statistical power studies for multi-omics experiments.☆29Updated last year
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆62Updated this week
- ☆53Updated 6 months ago
- Python biomart API☆61Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 4 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆33Updated 3 weeks ago
- Integrative pathway enrichment analysis of multivariate omics data☆98Updated last month
- Automated cell filtering for single-cell RNA sequencing data☆24Updated 10 months ago
- R package for analysing proteomics data☆47Updated last year
- Standalone shiny server container for viewing CellChat object☆12Updated 3 years ago
- Signac☆23Updated last year
- Differential Count Data Analysis Toolbox☆60Updated 7 months ago
- Multi-omics factor analysis v2☆34Updated last month
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆25Updated 9 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Analysis for svaseq paper☆19Updated 10 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆39Updated last week
- Cloud-based scalable and efficient single-cell genomics workflows☆54Updated last week