neuropoly / axonseg
Segment axon and myelin from microscopy data. Written in Matlab.
☆18Updated 5 years ago
Related projects: ⓘ
- Brain image registration package☆29Updated 8 years ago
- Converter for different neuro-imaging file formats.☆19Updated 6 years ago
- 3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )☆44Updated 3 weeks ago
- A lightweight GUI-based program for multi-dimensional data processing and analysis☆10Updated 6 years ago
- Matlab implementation of continuous max flow variants☆20Updated 7 years ago
- Awesome Magnetic Resonance Imaging (MRI)☆38Updated 3 years ago
- Matlab implementation of Marchenko Pastur denoising (Veraart et al, NeuroImage 142 (2016) 394–406)☆29Updated 3 years ago
- GPU accelerated non-Cartesian magnetic resonance imaging reconstruction toolkit☆12Updated 4 years ago
- Python notebooks and data for learning about image registration. Hosted at a summer school☆9Updated 6 years ago
- The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI☆24Updated last month
- Joelle Barral's gold standard inversion recovery T1 mapping package☆11Updated 4 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 3 years ago
- GPU accelerated source code for motion compensation of multi-stack MRI data☆57Updated 4 years ago
- MatlabBridge extension for 3D Slicer☆17Updated 4 months ago
- reconstruction and processing code for portable MRI data☆17Updated 4 years ago
- 2D image registration in python, using napari.☆15Updated 2 years ago
- Split Bregman spatiotemporal total variation for MRI☆12Updated 6 years ago
- PCA Model for Brain Extraction☆17Updated 5 years ago
- RegSeg is a simultaneous segmentation and registration method that uses active contours without edges (ACWE) extracted from structural im…☆12Updated 6 years ago
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆22Updated 3 months ago
- Repository for ISMRM 2020 educational session: Step-by-step reconstruction using learned dictionaries☆17Updated 4 years ago
- Guide to tutorial materials for ANTs/R☆45Updated 6 years ago
- dMRI based fiber tracking using parallel transport tractography☆16Updated last month
- MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness☆17Updated 2 months ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆15Updated 8 months ago
- Retrospective motion-correction of 3D MRI k-space data in Matlab☆37Updated 6 months ago
- ☆17Updated 2 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Updated 8 months ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Updated 7 years ago