neuropoly / axonsegLinks
Segment axon and myelin from microscopy data. Written in Matlab.
☆19Updated 6 years ago
Alternatives and similar repositories for axonseg
Users that are interested in axonseg are comparing it to the libraries listed below
Sorting:
- Brain image registration package☆31Updated 9 years ago
- Automated anatomical brain label/shape analysis software (+ website)☆154Updated 4 years ago
- Guide to tutorial materials for ANTs/R☆47Updated 7 years ago
- Biomedical Visualization and Analysis Framework☆43Updated last year
- Converter for different neuro-imaging file formats.☆19Updated 8 years ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆17Updated last year
- DICOM to Nifti conversion with meta data preservation☆77Updated last year
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- 3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )☆47Updated last year
- The Image Registration Toolkit☆83Updated 7 years ago
- A suite of tools for medical image processing focused on brain analysis☆125Updated last month
- Awesome Magnetic Resonance Imaging (MRI)☆46Updated 4 years ago
- Partial Volume Correction in PET☆64Updated last year
- 3D MRI data exploration and segmentation tool.☆76Updated 2 years ago
- Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.☆85Updated last week
- Tomographic vision☆43Updated 7 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- Analysis package written in Python to analyze MRI phantoms developed by NIST and collaborators at NCI, RSNA, NIBIB☆17Updated 7 months ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Updated last year
- BrainBox is a web application that lets you annotate and segment 3D brain imaging data in real time, collaboratively.☆103Updated 6 months ago
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆22Updated 6 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated last year
- A framework for developing neural network models for 3D image processing.☆167Updated this week
- GPU accelerated source code for motion compensation of multi-stack MRI data☆63Updated 5 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Updated last year
- Matlab implementation of continuous max flow variants☆21Updated 9 years ago
- DCE MRI analysis in Julia☆38Updated 4 years ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆331Updated 2 weeks ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆55Updated 4 months ago
- MatlabBridge extension for 3D Slicer☆19Updated last year