Alternatives and similar repositories for axonseg

Users that are interested in axonseg are comparing it to the libraries listed below

• nipy / nireg
  Brain image registration package
  ☆31Updated 9 years ago
• stnava / ANTsTutorial
  Guide to tutorial materials for ANTs/R
  ☆47Updated 7 years ago
• MarcCote / tractconverter
  Converter for different neuro-imaging file formats.
  ☆19Updated 7 years ago
• nipy / mindboggle
  Automated anatomical brain label/shape analysis software (+ website)
  ☆152Updated 4 years ago
• BioMedIA / IRTK
  The Image Registration Toolkit
  ☆81Updated 7 years ago
• tanguyduval / imtool3D_td
  3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )
  ☆46Updated last year
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆43Updated last year
• jlohmeier / atlasBREX
  atlasBREX: Automated averaged template-derived brain extraction in animal MRI
  ☆17Updated last year
• CAIsr / uniQC
  Unified NeuroImaging Quality Control (uniQC) toolbox
  ☆12Updated 3 years ago
• BrancoLab / imgreg2D
  2D image registration in python, using napari.
  ☆16Updated 3 years ago
• bkainz / fetalReconstruction
  GPU accelerated source code for motion compensation of multi-stack MRI data
  ☆62Updated 5 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆56Updated 3 months ago
• dangom / awesome-mri
  Awesome Magnetic Resonance Imaging (MRI)
  ☆46Updated 4 years ago
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• UCL / PETPVC
  Partial Volume Correction in PET
  ☆61Updated 9 months ago
• nipreps / fmriprep-rodents
  fMRIPrep for Rodents
  ☆13Updated 2 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago
• stnava / ANTsDoc
  Documentation for ANTs
  ☆16Updated 10 years ago
• BRAINSia / BRAINSTools
  A suite of tools for medical image processing focused on brain analysis
  ☆124Updated 3 months ago
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆85Updated 7 months ago
• moloney / dcmstack
  DICOM to Nifti conversion with meta data preservation
  ☆77Updated 10 months ago
• uncbiag / PStrip
  PCA Model for Brain Extraction
  ☆17Updated 6 years ago
• fangq / brain2mesh
  Brain2Mesh - a one-liner for high-quality brain mesh generation
  ☆41Updated 6 months ago
• SebastianoF / bruker2nifti
  Medical image format converter: from raw Bruker ParaVision to nifti.
  ☆31Updated last year
• CyclotronResearchCentre / spm_auto_reorient
  A few routines to perform "auto reorient" in SPM
  ☆16Updated 2 years ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆52Updated last year
• ofgulban / segmentator
  3D MRI data exploration and segmentation tool.
  ☆75Updated 2 years ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆17Updated 4 years ago
• MRIStandards / PhantomViewer
  Analysis package written in Python to analyze MRI phantoms developed by NIST and collaborators at NCI, RSNA, NIBIB
  ☆17Updated 5 months ago