Alternatives and similar repositories for axonseg:

Users that are interested in axonseg are comparing it to the libraries listed below

• nipy / nireg
  Brain image registration package
  ☆31Updated 8 years ago
• MarcCote / tractconverter
  Converter for different neuro-imaging file formats.
  ☆19Updated 7 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• stnava / ANTsTutorial
  Guide to tutorial materials for ANTs/R
  ☆46Updated 6 years ago
• uncbiag / PStrip
  PCA Model for Brain Extraction
  ☆17Updated 6 years ago
• BioMedIA / IRTK
  The Image Registration Toolkit
  ☆79Updated 7 years ago
• NIRALUser / SPHARM-PDM
  Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes …
  ☆50Updated 9 months ago
• jlohmeier / atlasBREX
  atlasBREX: Automated averaged template-derived brain extraction in animal MRI
  ☆16Updated last year
• tanguyduval / imtool3D_td
  3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )
  ☆44Updated 6 months ago
• samuelstjean / nlsam
  The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI
  ☆24Updated last month
• dangom / awesome-mri
  Awesome Magnetic Resonance Imaging (MRI)
  ☆43Updated 3 years ago
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• nipreps / fmriprep-rodents
  fMRIPrep for Rodents
  ☆12Updated last year
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆26Updated last month
• IBT-FMI / SAMRI
  Small Animal Magnetic Resonance Imaging via Python.
  ☆43Updated last year
• balbasty / nitorch
  Neuroimaging in PyTorch
  ☆90Updated 2 weeks ago
• stnava / ANTsDoc
  Documentation for ANTs
  ☆16Updated 9 years ago
• Inria-Empenn / Anima-Public
  Open source software for medical image processing from the Empenn team
  ☆39Updated 2 weeks ago
• jeffduda / NeuroBattery
  Using ANTs to process multiple MR image types for a single subject
  ☆24Updated 7 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆41Updated last year
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated 3 weeks ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated last month
• sammba-mri / sammba-mri
  small mammals brain MRI
  ☆16Updated last year
• fangq / brain2mesh
  Brain2Mesh - a one-liner for high-quality brain mesh generation
  ☆37Updated 2 weeks ago
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 7 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated this week
• nipy / nilabels
  Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
  ☆21Updated 9 months ago
• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆49Updated 2 years ago