neuropoly / axonsegLinks
Segment axon and myelin from microscopy data. Written in Matlab.
☆19Updated 6 years ago
Alternatives and similar repositories for axonseg
Users that are interested in axonseg are comparing it to the libraries listed below
Sorting:
- Brain image registration package☆31Updated 9 years ago
- Converter for different neuro-imaging file formats.☆19Updated 8 years ago
- 3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )☆47Updated last year
- Guide to tutorial materials for ANTs/R☆47Updated 7 years ago
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- Analysis package written in Python to analyze MRI phantoms developed by NIST and collaborators at NCI, RSNA, NIBIB☆17Updated 7 months ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆17Updated last year
- A few routines to perform "auto reorient" in SPM☆16Updated 2 years ago
- Automated anatomical brain label/shape analysis software (+ website)☆153Updated 4 years ago
- Unified NeuroImaging Quality Control (uniQC) toolbox☆12Updated 3 years ago
- Joelle Barral's gold standard inversion recovery T1 mapping package☆11Updated 5 years ago
- MRI simulator for educational purposes written in MATLAB☆54Updated 2 years ago
- 3D MRI data exploration and segmentation tool.☆76Updated 2 years ago
- fMRIPrep for Rodents☆13Updated 2 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆74Updated last week
- MRI phase combination algorithms for array-coils☆20Updated 4 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated last year
- ☆17Updated 9 years ago
- Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data☆21Updated 6 months ago
- Awesome Magnetic Resonance Imaging (MRI)☆46Updated 4 years ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Updated last year
- Matlab implementation of Marchenko Pastur denoising (Veraart et al, NeuroImage 142 (2016) 394–406)☆33Updated 11 months ago
- defacing utility for MRI images☆128Updated last year
- Biomedical Visualization and Analysis Framework☆43Updated last year
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- An end-to-end hybrid MR simulator/console☆73Updated 2 years ago
- Using ANTs to process multiple MR image types for a single subject☆26Updated 8 years ago
- A framework for developing neural network models for 3D image processing.☆167Updated last week
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- DICOM to Nifti conversion with meta data preservation☆77Updated 11 months ago