Fafa87 / cellstar
Algorithm for round cells identification in the brightfield microscopy images.
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for cellstar
- Python scripts for tracking cells in fluorescent microscopy.☆11Updated 6 years ago
- U-net based segmentation of nuclei in microscopy images☆51Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆42Updated 6 years ago
- ☆49Updated 6 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆87Updated 2 years ago
- A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images☆58Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- PyTorch implementation of several neural network models for cellular image segmentation☆47Updated 5 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 2 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆18Updated 2 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆40Updated 7 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆58Updated 4 years ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆49Updated last year
- ☆25Updated 4 years ago
- Notebooks for VoidSeg☆16Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu …☆37Updated 5 years ago
- The ImageJ plugin to run deep-learning models☆86Updated this week
- An interactive tool for segmenting yeast cells using deep learning.☆27Updated 8 months ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆43Updated 5 months ago
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- Using Python for image processing and analysis☆32Updated 7 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆53Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- Automatic segmentation of electron microscopy volumes☆76Updated 3 years ago
- Distributed segmentation for bio-image-analysis☆36Updated 4 months ago