A program interfacing Segment Anything with cryoSPARC via cryosparc-tools to efficiently identify vesicle-embedded membrane proteins and complexes in cryo-EM micrographs.
☆13Feb 18, 2025Updated last year
Alternatives and similar repositories for vesicle-picker
Users that are interested in vesicle-picker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch Implementation of CryoSPIN, NeurIPS 2024☆18Jan 30, 2025Updated last year
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 5 months ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 5 years ago
- ☆27May 19, 2026Updated last month
- TemCompanion: a tool to view, edit, filter, and convert TEM image files to tiff, png, and jpg.☆30May 4, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Nov 3, 2021Updated 4 years ago
- Covariance Estimation and Denoising for Cryo-EM Images (Covariance Wiener Filtering)☆14Aug 8, 2017Updated 8 years ago
- Localized reconstruction of flexible subunits from cryo-EM images☆16Oct 19, 2020Updated 5 years ago
- Detect and erase gold fiducials in cryo-EM images☆16May 27, 2025Updated last year
- From cryo-EM density map to atomic structure☆31Aug 17, 2025Updated 10 months ago
- Control and Automation of Transmission Electron Microscopes☆15Aug 12, 2022Updated 3 years ago
- A curated list of awesome computational cryo-EM methods.☆148Nov 23, 2025Updated 7 months ago
- Python library that enables scripting access to CryoSPARC, a cryo-EM software package.☆48Jun 29, 2026Updated last week
- ☆16May 11, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆61Oct 3, 2025Updated 9 months ago
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆22Mar 12, 2026Updated 3 months ago
- ☆13Jun 22, 2026Updated 2 weeks ago
- STAR file I/O in Python☆56Jun 22, 2026Updated 2 weeks ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆42Apr 11, 2023Updated 3 years ago
- ☆60Apr 7, 2026Updated 3 months ago
- ☆91Sep 25, 2024Updated last year
- Two-Dimensional Template Matching implemented in Python☆16Jun 22, 2026Updated 2 weeks ago
- Rapid Cryo-ET Reconstruction via Transform-Localized Deep Learning☆21Jun 29, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automatic atomic model building program for cryo-EM maps☆171Jun 15, 2026Updated 3 weeks ago
- ☆57Aug 19, 2024Updated last year
- Web application for monitor EM results☆13Jul 1, 2026Updated last week
- ☆18Updated this week
- ☆49Updated this week
- Useful aliases and startup settings for ChimeraX☆42May 14, 2026Updated last month
- Transformer And Rapid Dimensionless Instance Segmentation☆23May 30, 2026Updated last month
- SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.☆17Oct 25, 2024Updated last year
- Parallel cryo electron tomography via beam image shift☆42Jun 4, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Algorithms for Single Particle Reconstruction☆65Jul 2, 2026Updated last week
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- Removing Scratches, Stripes, and Curtaining Artifacts in Micrographs☆16Jul 21, 2020Updated 5 years ago
- Graph Representation Analysis for Connected Embeddings☆34Oct 10, 2024Updated last year
- A fork of Autodock Vina for DeltaVina scoring function☆10Nov 7, 2016Updated 9 years ago
- ☆38Jun 22, 2023Updated 3 years ago
- ☆132Jun 18, 2025Updated last year