justinbois / biocircuitsLinks
Utilities for Caltech course BE 150
☆23Updated last year
Alternatives and similar repositories for biocircuits
Users that are interested in biocircuits are comparing it to the libraries listed below
Sorting:
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆27Updated 2 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆107Updated this week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Code for the Manifold Boundary Approximation Method☆14Updated 2 years ago
- Rule-based modeling framework☆64Updated last week
- ☆31Updated 3 years ago
- Modeling toolkit for biochemical simulation☆74Updated 4 months ago
- Python utilities for SBML☆41Updated this week
- A Julia package to read, write and manipulate macromolecular structures☆100Updated this week
- Probabilistic Graphical Models in Python3.☆24Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated this week
- Whole-cell modeling tutorials☆16Updated 4 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- A Versatile and Open Source One- and Two-Photon Light-Sheet Microscope Design☆11Updated last year
- ☆102Updated 2 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆24Updated 9 months ago
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated last year
- Tips on figure making, plus help with Inkscape and Matplotlib.☆44Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Tutorials for the book.☆12Updated 3 years ago
- GPU-accelerated multicellular modelling framework☆62Updated last month
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆100Updated 2 years ago
- Quantum Gene Regulatory Networks with Application to Single-cell Data☆18Updated 3 months ago
- ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers☆18Updated 6 months ago
- Core Interface and Engine for Vivarium 1.0☆30Updated 6 months ago
- ☆11Updated 5 months ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- A modular compiler for biological chemical reaction networks☆45Updated this week