Utilities for Caltech course BE 150
☆25Nov 24, 2023Updated 2 years ago
Alternatives and similar repositories for biocircuits
Users that are interested in biocircuits are comparing it to the libraries listed below
Sorting:
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Modern Hopfield layer implementations in Julia☆16Jul 21, 2022Updated 3 years ago
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆19Aug 29, 2024Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Graph generative pre-trained transformer☆19Jun 3, 2025Updated 9 months ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Mar 3, 2023Updated 3 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 4 years ago
- ☆14Jun 30, 2024Updated last year
- Code and data to the publication "SpikE: spike-based embeddings for multi-relational graph data".☆15Apr 12, 2023Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- Simple visual programming environment for jupyterlab☆15Feb 20, 2026Updated last month
- Python package for creating, calibrating and simulating RBA models☆13Jun 5, 2023Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated 2 months ago
- Official implementation of SAGNN☆19Aug 7, 2023Updated 2 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 7 months ago
- Streamlined Cello Algorithm. Feed it Verilog and UCF from CIDARLAB/CELLO-UCF, and run celloAlgo.py in terminal to make genetic circuit de…☆20Sep 16, 2024Updated last year
- The mildly ominous parameter exploration toolkit 🛵 - Run huge simulations on distributed clusters, because why not? 🤯☆14Feb 16, 2021Updated 5 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆15Dec 18, 2025Updated 3 months ago
- USB Touchscreen driver for Eleduino 7 inch tft lcd display with touchscreen☆12Dec 18, 2015Updated 10 years ago
- UNICORE REST bindings for python☆10Feb 25, 2026Updated 3 weeks ago
- ☆16Jul 6, 2023Updated 2 years ago
- Framework for multi-omics data integration by autoencoders☆31Jan 20, 2026Updated 2 months ago
- real-time visualization of TMS-evoked potentials☆11Nov 29, 2023Updated 2 years ago
- Automatic selection and generation of integration schemes for systems of ordinary differential equations☆14Mar 13, 2026Updated last week
- Philips to ISMRMRD converter☆18Jun 18, 2020Updated 5 years ago
- Lab Automation Scheduling Software☆22Dec 27, 2025Updated 2 months ago
- Julia bindings to SG-t-SNE-Π☆26Oct 23, 2024Updated last year
- Lab manual for the Contextual Dynamics Laboratory at Dartmouth College☆20Mar 13, 2026Updated last week
- S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitations☆14Sep 27, 2025Updated 5 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Mar 29, 2025Updated 11 months ago
- Matplotlib function to represent a vector field with path-following arrows☆20Sep 26, 2018Updated 7 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆23Dec 9, 2024Updated last year
- Main repository for the Modular Autonomous Discovery for Science (MADSci) Framework☆50Updated this week
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Various visualizations of day and night☆13Dec 24, 2020Updated 5 years ago