MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION
☆20Sep 23, 2025Updated 5 months ago
Alternatives and similar repositories for MADGEN
Users that are interested in MADGEN are comparing it to the libraries listed below
Sorting:
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆23Oct 13, 2025Updated 4 months ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- NMR structure elucidation☆18Jun 16, 2025Updated 8 months ago
- ☆12Jul 28, 2022Updated 3 years ago
- AI for Chemical Spectra☆16Dec 24, 2025Updated 2 months ago
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆35Jan 18, 2026Updated last month
- Tandem Mass Spectrum Prediction with Graph Transformers☆99Aug 26, 2024Updated last year
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆20Oct 15, 2024Updated last year
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆47Oct 17, 2025Updated 4 months ago
- Official Implementation of Expressivity and Generalization: Fragment-Biases for Molecular GNNs☆20Nov 6, 2024Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆114Nov 13, 2025Updated 3 months ago
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆26Jan 25, 2023Updated 3 years ago
- A Graph Neural Network for molecular property prediction with four levels of Interpretability.☆25Feb 3, 2026Updated 3 weeks ago
- Predicting tandem mass spectra from molecules☆131Feb 10, 2026Updated 2 weeks ago
- ☆30Mar 14, 2021Updated 4 years ago
- An atom-bond transformer-based message passing neural network for molecular property prediction.☆36Mar 8, 2023Updated 2 years ago
- This project is a Graphical User Interface frontend for GlycoGenius, a python program that aims to be an all-in-one solution for data ana…☆15Jan 25, 2026Updated last month
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆162Feb 17, 2026Updated last week
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated 3 weeks ago
- ☆11Nov 30, 2024Updated last year
- A python package for spectral deconvolution of UV-Vis waveforms☆14Jul 1, 2021Updated 4 years ago
- ☆14Mar 6, 2022Updated 3 years ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 4 years ago
- A Network Integration Approach for Drug-Target Interaction Prediction☆13Apr 5, 2025Updated 10 months ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- ☆11Apr 10, 2022Updated 3 years ago
- Brent's code for FTIR deconvolution☆12Dec 17, 2020Updated 5 years ago
- 【Nature Computational Science 2025🔥】Deep peak property learning for efficient chiral molecules ECD spectra prediction☆51Jan 12, 2025Updated last year
- Code for ICLR'24 Paper "Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks"☆10Mar 12, 2024Updated last year
- 中国科学技术大学-微软亚洲研究院创新实践项目 医学文献翻译组☆12May 26, 2021Updated 4 years ago
- ☆11Dec 27, 2021Updated 4 years ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 8 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- Graph Neural Networks for Drug Efficacy Prediction☆11Sep 11, 2022Updated 3 years ago
- ☆12Jul 10, 2022Updated 3 years ago
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated last month
- CopyNet (Copy Mechanism in Seq2Seq) implementation with TensorFlow 2☆10Nov 21, 2022Updated 3 years ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago