anhvt00 / MCAPS
My work on building a deep neural network for fast and accurate protein protein interaction prediction
☆9Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for MCAPS
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- ☆63Updated last month
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆56Updated 3 months ago
- ☆45Updated 5 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆28Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- Evolutionary velocity with protein language models☆83Updated last year
- ☆27Updated 2 weeks ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆77Updated 7 months ago
- Ultra-fast in-silico structure mutation☆32Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆28Updated 3 months ago
- ☆18Updated 3 years ago
- ☆18Updated last year
- A domain parser for Alphafold models☆32Updated 11 months ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆19Updated 3 years ago
- Deep learning prediction of enzyme optimum pH☆22Updated 11 months ago
- ☆20Updated 5 months ago
- Predict the structure of immune receptor proteins☆46Updated this week
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 7 months ago
- Detection of remote homology by comparison of protein language model representations☆44Updated last week
- Contrastive learning harmonizing protein language models and natural language models☆23Updated 5 months ago
- Protein language model trained on coding DNA☆38Updated 3 weeks ago
- ☆28Updated last month
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆83Updated 2 months ago
- ☆33Updated last month
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago