Alternatives and similar repositories for upsetty

Users that are interested in upsetty are comparing it to the libraries listed below

• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆144Updated this week
• depictio / depictio
  Bioinformatics web-platform visualisation dashboard creation
  ☆36Updated this week
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 4 months ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆61Updated last week
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆235Updated 2 months ago
• wheretrue / biobear
  Work with bioinformatic files using Arrow, Polars, and/or DuckDB
  ☆195Updated 11 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• koonimaru / omniplot
  Statistical analysis, clustering and visualinzing scientific data with hassle free
  ☆26Updated 7 months ago
• epi2me-labs / ezcharts
  ☆23Updated 2 months ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆82Updated 3 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 10 months ago
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆75Updated 4 years ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated 3 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆81Updated last year
• kpj / rwrap
  Seamlessly integrate R packages into Python.
  ☆21Updated 2 years ago
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆148Updated last week
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆182Updated 3 weeks ago
• taxoniq / taxoniq
  Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data
  ☆59Updated last year
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆23Updated 2 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 9 months ago
• qbic-pipelines / vcftomaf
  Nextflow pipeline to convert VCF files into MAF files.
  ☆10Updated 2 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆69Updated 4 months ago
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆181Updated last week
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 10 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆64Updated 2 months ago
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆69Updated 3 years ago