Alternatives and similar repositories for upsetty

Users that are interested in upsetty are comparing it to the libraries listed below

• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆230Updated 3 weeks ago
• wheretrue / biobear
  Work with bioinformatic files using Arrow, Polars, and/or DuckDB
  ☆189Updated 6 months ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated 3 weeks ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated this week
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆78Updated last week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆137Updated last week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 8 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 3 years ago
• depictio / depictio
  Bioinformatics web-platform visualisation dashboard creation
  ☆22Updated last week
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆69Updated last year
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated last week
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆32Updated last month
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆58Updated 3 months ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 5 months ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆179Updated last week
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆184Updated last week
• epi2me-labs / ezcharts
  ☆22Updated 2 months ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆175Updated last week
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆81Updated 2 years ago
• koonimaru / omniplot
  Statistical analysis, clustering and visualinzing scientific data with hassle free
  ☆25Updated 2 months ago
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆115Updated last year
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆38Updated 3 months ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated 3 months ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated last week