dmnfarrell / teachingLinks
scripts and notes for learning
☆39Updated last year
Alternatives and similar repositories for teaching
Users that are interested in teaching are comparing it to the libraries listed below
Sorting:
- Pandas DataFrames for phylogenetics☆73Updated 4 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated last month
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- Applied Statistics for High-Throughput Biology☆16Updated 10 months ago
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆35Updated 2 years ago
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆14Updated 5 years ago
- A Mesa-based ABM library for epidemiological (SIR) modeling.☆12Updated 5 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆27Updated last year
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- Example notebooks of pyCircos☆29Updated 3 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Tool for estimating growth rates from microbial growth curves☆30Updated 3 years ago
- A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.☆42Updated 11 months ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- Draw genetic elements with HTML & CSS☆16Updated 8 years ago
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- Functional enrichment terms aggregator☆18Updated last year
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- A Python library for reading and manipulating genetic data.☆22Updated 7 months ago
- A python package for optimizing processing pipelines using statistical design of experiments (DoE).☆24Updated 2 years ago
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 3 weeks ago
- Spatial Transcriptomics Dashboard☆27Updated last year
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆54Updated 2 years ago
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆12Updated last month
- GitHub for the SIB courses NGS - Genome variant analysis☆25Updated 5 months ago
- topological data analysis of population-scale microbiomes☆32Updated 2 years ago
- 🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software☆20Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 10 months ago