Alternatives and similar repositories for PUP

Users that are interested in PUP are comparing it to the libraries listed below

• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆112Updated last week
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆43Updated 2 weeks ago
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆110Updated last year
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆71Updated this week
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆65Updated last month
• isebenius / MIND
  This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…
  ☆42Updated last year
• NotaCS / Functionnectome
  Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.
  ☆33Updated last year
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 10 months ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆66Updated 10 months ago
• predictive-clinical-neuroscience / braincharts
  ☆39Updated 3 months ago
• mvgolub / FW-DTI-Beltrami
  ☆12Updated 2 years ago
• MICA-MNI / micapipe
  micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…
  ☆111Updated this week
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• carpentries-incubator / SDC-BIDS-fMRI
  fMRI Imaging Analysis
  ☆47Updated this week
• juaml / brainage_estimation
  ☆16Updated last year
• molecular-neuroimaging / Imaging_Transcriptomics
  A package, and script, to perform imaging transcriptomics on a neuroimaging scan.
  ☆15Updated last year
• sina-mansour / UKB-connectomics
  This repository will host scripts used to map structural and functional brain connectivity matrices for the UK biobank dataset.
  ☆68Updated last year
• DCAN-Labs / abcd-hcp-pipeline
  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
  ☆56Updated 2 weeks ago
• MICA-MNI / ENIGMA
  The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …
  ☆163Updated 2 months ago
• zijin-gu / scfc-coupling
  Code for paper Heritability and interindividual variability of regional structure-function coupling.
  ☆22Updated 2 years ago
• ucl-mig / SuStaInMatlab
  ☆16Updated 4 years ago
• carpentries-incubator / SDC-BIDS-sMRI
  Structural Neuroimaging Analysis in Python
  ☆32Updated last week
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆42Updated 3 years ago
• CoBrALab / twolevel_ants_dbm
  A twolevel deformation based morphometry pipeline using ants
  ☆13Updated 4 months ago
• juryxy / JuSpace
  This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…
  ☆60Updated 6 months ago
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆97Updated 7 months ago
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆51Updated this week
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆105Updated this week
• SIMEXP / load_confounds
  Load fMRIprep confounds in python
  ☆37Updated 3 years ago