Alternatives and similar repositories for MAGeTbrain:

Users that are interested in MAGeTbrain are comparing it to the libraries listed below

• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆72Updated 3 months ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆30Updated 8 years ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 4 months ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated 2 weeks ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆66Updated last year
• poldracklab / pydeface
  defacing utility for MRI images
  ☆118Updated last year
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• johncolby / along-tract-stats
  A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
  ☆43Updated 11 years ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆51Updated this week
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆25Updated 3 weeks ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 2 months ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated 9 months ago
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• BIC-MNI / minc
  OBSOLETE: Medical Image NetCDF, this package is now split into two parts: libminc ( https://github.com/BIC-MNI/libminc ) and minc-tools (…
  ☆34Updated 8 years ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆47Updated 7 months ago
• jeffduda / NeuroBattery
  Using ANTs to process multiple MR image types for a single subject
  ☆24Updated 7 years ago
• stnava / ANTsTutorial
  Guide to tutorial materials for ANTs/R
  ☆46Updated 6 years ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆91Updated this week
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated 3 months ago
• jlohmeier / atlasBREX
  atlasBREX: Automated averaged template-derived brain extraction in animal MRI
  ☆16Updated last year
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆47Updated 2 months ago
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆35Updated 2 months ago
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆26Updated last year
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆92Updated last week
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆25Updated last month
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆31Updated 4 years ago
• neurospin / pypreprocess
  Preprocessing scripts for neuro imaging
  ☆107Updated last year