dsheldon / covidLinks
Bayesian modeling of COVID-19
☆31Updated 2 years ago
Alternatives and similar repositories for covid
Users that are interested in covid are comparing it to the libraries listed below
Sorting:
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 4 years ago
- Interfacing several COVID-19 related datasets☆45Updated 3 years ago
- Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)☆14Updated 5 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆23Updated 5 years ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆41Updated 5 years ago
- ☆53Updated last year
- Updates to the synthetic contact matrices☆37Updated last year
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated last year
- This is the raw data repository (policy record format) of the CoronaNet project on government responses to the COVID-19 pandemic.☆100Updated last year
- ☆89Updated 5 years ago
- Repo for code from the SBC paper☆24Updated 6 years ago
- stan2tfp is a lightweight interface to the TensorFlow Probability backend of the Stan compiler. It provides the necessary objects and fun…☆25Updated 3 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆48Updated 7 months ago
- PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross☆168Updated last year
- Source code and data for the tutorial: "Getting started with particle Metropolis-Hastings for inference in nonlinear models"☆28Updated 6 years ago
- An interactive visualization tool that transforms probabilistic programming models into an "Interactive Probabilistic Models Explorer".☆24Updated last year
- ☆15Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- Source files for the book "Bayesian Workflow Using Stan"☆96Updated 3 years ago
- Contemporary statistical inference for infectious disease models using Stan☆17Updated 6 years ago
- Temporal variation in transmission during the COVID-19 outbreak☆109Updated 3 years ago
- Home for the computational inference reading group.☆17Updated 5 years ago
- Bayesian Regression Models in Pyro☆72Updated last year
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆122Updated 2 years ago
- Extended state-space SIR epidemiological models☆75Updated 3 years ago
- Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…☆36Updated 10 months ago
- Guidelines and forecasts for a collaborative U.S. influenza forecasting project.☆39Updated 5 years ago