Alternatives and similar repositories for covid:

Users that are interested in covid are comparing it to the libraries listed below

• epidemics / COVIDNPIs
  Data and code for COVID-19 NPI effectiveness estimation.
  ☆30Updated 3 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated last year
• CoronaNetDataScience / corona_tscs
  This is the raw data repository (policy record format) of the CoronaNet project on government responses to the COVID-19 pandemic.
  ☆98Updated last year
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆36Updated last year
• InstituteforDiseaseModeling / synthpops
  Create synthetic populations for COVID-19 epidemic analyses.
  ☆45Updated 2 months ago
• MrinankSharma / COVID19NPISecondWave
  ☆15Updated 3 years ago
• kieshaprem / covid19-agestructureSEIR-wuhan-social-distancing
  Age-structured SEIR model for COVID-19 outbreak in Wuhan, China
  ☆40Updated 4 years ago
• FluSightNetwork / cdc-flusight-ensemble
  Guidelines and forecasts for a collaborative U.S. influenza forecasting project.
  ☆38Updated 4 years ago
• lilywang1988 / eSIR
  Extended state-space SIR epidemiological models
  ☆75Updated 3 years ago
• anastasiachtz / COMMAND_stan
  Contemporary statistical inference for infectious disease models using Stan
  ☆15Updated 5 years ago
• mobs-lab / mixing-patterns
  Inferring high-resolution human mixing patterns for disease modeling
  ☆45Updated 2 years ago
• midas-network / covid19-scenario-modeling-hub
  COVID-19 Scenario Modeling Hub
  ☆64Updated 2 weeks ago
• aakhmetz / COVID19IncubationPeriod
  Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
  ☆14Updated 4 years ago
• mrc-ide / COVID19_CFR_submission
  Repository for all scripts required to replicate the CFR analysis for paper submission.
  ☆71Updated 4 years ago
• UGentBiomath / COVID19-Model
  Compartmental SEIQRD model to model the effects of government policies on SARS-CoV-2 spread in Belgium. Macro-economic Input-Output model…
  ☆23Updated 2 weeks ago
• majelli / Rt
  Bayesian estimation of Rt (C code)
  ☆13Updated 4 years ago
• NSSAC / PatchSim
  Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
  ☆25Updated 7 months ago
• cbreto / panelPomp
  R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)
  ☆11Updated 4 months ago
• rs-delve / covid19_datasets
  Interfacing several COVID-19 related datasets
  ☆45Updated 2 years ago
• jg-you / noisy-networks-measurements
  Noisy network measurement with stan
  ☆55Updated 3 years ago
• cmmid / covid-age
  Analysis code and data for COVID-19 age-specific clinical fraction
  ☆22Updated 4 years ago
• jriou / covid_adjusted_cfr
  ☆88Updated 4 years ago
• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆18Updated 9 months ago
• HopkinsIDD / hit-covid
  Data and Codebook for the HIT-COVID Project
  ☆21Updated 3 years ago
• LedgerInvesting / bayesblend
  Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…
  ☆34Updated 2 months ago
• Emergent-Epidemics / infectious_disease_predictability
  Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
  ☆17Updated 5 years ago
• cmmid / ringbp
  ☆53Updated last year
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆38Updated last month
• Mythobeast / epidemicmodels
  SIR, SEIR, and beyond
  ☆10Updated last year
• wpgp / BEARmod
  Basic Epidemic, Activity, and Response COVID-19 model
  ☆31Updated 4 years ago