dsheldon / covidLinks
Bayesian modeling of COVID-19
☆31Updated 3 years ago
Alternatives and similar repositories for covid
Users that are interested in covid are comparing it to the libraries listed below
Sorting:
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 4 years ago
- Interfacing several COVID-19 related datasets☆45Updated 3 years ago
- Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)☆14Updated 5 years ago
- Random Forests for Conditional Density Estimation☆43Updated 4 years ago
- Extended state-space SIR epidemiological models☆75Updated 4 years ago
- stan2tfp is a lightweight interface to the TensorFlow Probability backend of the Stan compiler. It provides the necessary objects and fun…☆25Updated 3 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆24Updated 5 years ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆41Updated 5 years ago
- Contemporary statistical inference for infectious disease models using Stan☆16Updated 6 years ago
- ☆12Updated 4 years ago
- Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools☆56Updated 5 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross☆168Updated last year
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆49Updated 10 months ago
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 5 years ago
- ☆89Updated 5 years ago
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆126Updated 2 months ago
- Source files for the book "Bayesian Workflow Using Stan"☆97Updated 4 years ago
- This is the raw data repository (policy record format) of the CoronaNet project on government responses to the COVID-19 pandemic.☆101Updated 2 years ago
- Inference case studies in jupyter☆93Updated 7 years ago
- Updates to the synthetic contact matrices☆39Updated 2 years ago
- Pythonic interface to R's brms☆45Updated 3 years ago
- SIR-Hawkes: Linking Epidemic Models and Hawkes Processes to Model Diffusions in Finite Populations☆14Updated 7 years ago
- 'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)☆67Updated 5 years ago
- Repo for code from the SBC paper☆24Updated 6 years ago
- Bayesian Regression Models in Pyro☆73Updated last year
- Bayesian Modeling using Stan in R (May/June 2016)☆54Updated 9 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Updated 3 years ago
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆23Updated this week