cjw85 / myriad
Simple distributed computing in python
☆8Updated 8 years ago
Alternatives and similar repositories for myriad:
Users that are interested in myriad are comparing it to the libraries listed below
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last week
- Augmented Interval Tree implemented in Cython/C☆19Updated 7 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 7 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Updated 4 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Updated 6 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆21Updated 2 months ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆16Updated last year
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆21Updated last month
- Log command line events to a graph database :)☆13Updated 8 years ago
- ☆10Updated 3 years ago
- Write-once-read-many table for large datasets.☆28Updated last year
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 4 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 8 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆13Updated 7 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Updated 3 years ago
- Polygenic score calculation from VCF in Nim.☆15Updated 4 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 3 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆29Updated 4 years ago
- Python toolkit for building restartable pipelines☆46Updated last month
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 3 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 7 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 7 years ago
- Genevieve genome report tool☆14Updated last year
- Tools used to analyze data from nanopore-based experiments.☆29Updated 9 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago