bio-ontology-research-group / DL2Vec
Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.
☆20Updated last year
Related projects: ⓘ
- ☆19Updated 4 years ago
- Network-based project to explore gene connectivity through biological scales☆20Updated 2 years ago
- ☆52Updated 3 years ago
- ☆62Updated last year
- A Knowledge Graph for Relational Learning On Biological Data☆75Updated 6 months ago
- ☆13Updated last week
- Unsupervised neural network for learning embeddings of GO terms.☆15Updated 2 years ago
- ☆50Updated 5 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆30Updated last month
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 3 years ago
- Function prediction using a deep ontology-aware classifier☆77Updated last year
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆32Updated 3 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 3 years ago
- Protein Graph in Python for MetaPath-ML and more.☆17Updated 2 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆50Updated last month
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆54Updated last year
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆23Updated 3 years ago
- ☆23Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆15Updated last month
- ☆43Updated last year
- Biological Network Integration using Convolutions☆58Updated 8 months ago
- code for Gogleva et al manuscript☆45Updated last year
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆19Updated 8 months ago
- A Standard Database for Drug Repositioning☆17Updated 7 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆38Updated last year
- DeepGO with Fuzzy DL☆27Updated 2 years ago
- Heterogeneous disease-gene-related☆16Updated 3 years ago
- 🪝 What's the latest version for each database?☆26Updated this week
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 3 years ago
- ☆16Updated 2 years ago