bio-ontology-research-group / DL2VecLinks
Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.
☆19Updated 2 years ago
Alternatives and similar repositories for DL2Vec
Users that are interested in DL2Vec are comparing it to the libraries listed below
Sorting:
- ☆69Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- A Knowledge Graph for Relational Learning On Biological Data☆106Updated last year
- ☆58Updated 5 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆239Updated 5 months ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Updated 3 years ago
- Hetionet: an integrative network of disease☆319Updated 2 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆154Updated last year
- Build PharMeBINet from different sources.☆20Updated 3 weeks ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated last week
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆26Updated 2 months ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated last week
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated 4 months ago
- ☆20Updated 5 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆52Updated 4 months ago
- DeepGO with GOPlus axioms☆97Updated 3 weeks ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆195Updated last year
- OBO-formatted ontologies → networkx (Python 3)☆148Updated 7 months ago
- A resource of adverse drug effects extracted from FDA structured product labels☆83Updated 4 months ago
- Source code for the DeepViral paper☆10Updated 4 years ago
- ☆57Updated 6 years ago
- Heterogeneous disease-gene-related☆18Updated 4 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆136Updated 3 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 5 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆61Updated last week
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- code for Gogleva et al manuscript☆46Updated 2 years ago