bio-ontology-research-group / DL2VecLinks
Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.
☆19Updated 2 years ago
Alternatives and similar repositories for DL2Vec
Users that are interested in DL2Vec are comparing it to the libraries listed below
Sorting:
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- ☆73Updated 2 years ago
- Build PharMeBINet from different sources.☆20Updated last month
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆27Updated 4 months ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆107Updated last year
- ☆58Updated 5 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated 2 weeks ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Updated 3 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- DeepGO with GOPlus axioms☆101Updated 2 months ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆53Updated last month
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 5 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆67Updated 2 months ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆245Updated 7 months ago
- code for Gogleva et al manuscript☆46Updated 3 years ago
- ☆20Updated 5 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated last week
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Updated 4 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆157Updated last year
- Hetionet: an integrative network of disease☆331Updated 2 years ago
- ☆49Updated last year
- The official code implementation for DREAMwalk in Python.☆29Updated 2 years ago
- DeepGO with Fuzzy DL☆31Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆75Updated 2 years ago
- Transformer-based protein function Annotation with joint feature-Label Embedding☆36Updated last year
- ☆24Updated 2 years ago
- ☆38Updated 2 years ago