cbg-ethz / pybdaLinks
A commandline tool for analysis of big biological data sets for distributed HPC clusters.
☆9Updated 9 months ago
Alternatives and similar repositories for pybda
Users that are interested in pybda are comparing it to the libraries listed below
Sorting:
- My computational biology course as it evolves in real time☆14Updated 3 years ago
- Notes and code from a network biology study group at UMD.☆10Updated 10 years ago
- 💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery☆37Updated 10 months ago
- An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.☆37Updated last year
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆32Updated 6 years ago
- DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression sa…☆19Updated 7 years ago
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Updated 6 years ago
- ☆14Updated 2 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- Introduction to the Unix Shell for biologists☆21Updated 3 years ago
- Bioinformatics course (WSBIM1322)☆17Updated last week
- 🧬 Toolkit for generating various numerical features of protein sequences☆52Updated 10 months ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- ☆13Updated 2 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- screenlamp is a Python toolkit for hypothesis-driven virtual screening☆24Updated 7 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last month
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 4 years ago
- A project to capture biological pathway data from academic papers☆29Updated 4 months ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆11Updated 4 months ago
- PePPer - Personalized Perturbation Profiler☆11Updated 6 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Updated 4 years ago
- Volume-regularized NMF☆17Updated 3 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated last year
- ☆16Updated 5 years ago
- a Graph database and R package for omic data integration☆20Updated 8 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago