🏃🏃 Your next-gen single-cell Foundation Model
☆39Sep 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for scPRINT-2
Users that are interested in scPRINT-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🏃 The go-to single-cell Foundation Model☆162Aug 11, 2026Updated last month
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 21, 2026Updated 2 weeks ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last month
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆17Nov 5, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 4 months ago
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆44Sep 3, 2025Updated last year
- ☆55Mar 4, 2025Updated last year
- ☆15Jan 14, 2025Updated last year
- Distributed single-cell data analysis.☆40Oct 2, 2026Updated last week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆71Oct 2, 2026Updated last week
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 9 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆83Updated this week
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆21Apr 16, 2026Updated 5 months ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 6 months ago
- ☆101Aug 10, 2026Updated 2 months ago
- ☆16Aug 1, 2026Updated 2 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆36Mar 19, 2025Updated last year
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆721Jul 24, 2026Updated 2 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆50Aug 25, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An interactive tool to explore low dimensional embeddings of omics data.☆17Mar 27, 2026Updated 6 months ago
- ☆28Updated this week
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 7 months ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 11 months ago
- Relief Based Algorithms of ReBATE implemented in Python with Cython optimization. This repository is no longer being updated. Please see…☆32May 22, 2018Updated 8 years ago
- Manage biological ontologies.☆27Updated this week
- ☆25Sep 12, 2022Updated 4 years ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆19Jan 2, 2018Updated 8 years ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆86Sep 25, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Dec 18, 2024Updated last year
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆23Feb 23, 2026Updated 7 months ago
- ☆28Updated this week
- Arc Virtual Cell Atlas☆622Sep 29, 2026Updated last week
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- A BGEN file format reader.☆14Jun 17, 2024Updated 2 years ago
- ☆13Mar 23, 2024Updated 2 years ago