ππ Your next-gen single-cell Foundation Model
β39Sep 8, 2026Updated last week
Alternatives and similar repositories for scPRINT-2
Users that are interested in scPRINT-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π The go-to single-cell Foundation Modelβ162Aug 11, 2026Updated last month
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed singleβ¦β16Dec 8, 2024Updated last year
- a dataloader to work with large single cell datasets from lamindbβ41Aug 27, 2026Updated 3 weeks ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biologyβ39Mar 1, 2026Updated 6 months ago
- Single Cell Pretrained Regulatory network INference from Transcriptsβ11Sep 17, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- single cell foundation model for Gene network inference and moreβ20May 20, 2026Updated 4 months ago
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)β43Sep 3, 2025Updated last year
- β55Mar 4, 2025Updated last year
- Distributed single-cell data analysis.β40Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omicsβ82Updated this week
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.β20Apr 16, 2026Updated 5 months ago
- Interactive spatial transcriptomics viewer for h5ad filesβ16Mar 14, 2026Updated 6 months ago
- β97Aug 10, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contextsβ695Jul 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for evaluating single cell foundation models scBERT and scGPTβ50Aug 25, 2024Updated 2 years ago
- An interactive tool to explore low dimensional embeddings of omics data.β17Mar 27, 2026Updated 5 months ago
- β28Sep 2, 2026Updated 2 weeks ago
- A modular tool for proportion analysis in single-cell sequencing dataβ29Feb 26, 2026Updated 6 months ago
- A Predictive World Model of the Transcriptomeβ35Oct 18, 2025Updated 11 months ago
- Relief Based Algorithms of ReBATE implemented in Python with Cython optimization. This repository is no longer being updated. Please seeβ¦β32May 22, 2018Updated 8 years ago
- Registries for biological ontologies.β27Updated this week
- β25Sep 12, 2022Updated 4 years ago
- β123Aug 18, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- DeepTM: A deep learning setup for prediction of transmembrane proteinsβ19Jan 2, 2018Updated 8 years ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopesβ86Jul 10, 2026Updated 2 months ago
- β16Dec 18, 2024Updated last year
- Arc Virtual Cell Atlasβ594Aug 28, 2026Updated 3 weeks ago
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequencesβ¦β23Feb 23, 2026Updated 6 months ago
- β28Updated this week
- Metrics for our protein design competitions.β36Nov 1, 2024Updated last year
- A BGEN file format reader.β14Jun 17, 2024Updated 2 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genomeβ26Aug 17, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Transformer models for predicting gene regulatory networks from omics dataβ22Mar 4, 2026Updated 6 months ago
- Python API and Jupyter widget for Vitessceβ67Updated this week
- ML-based ligand generatorβ23May 8, 2026Updated 4 months ago
- The software of Pamona, a partial manifold alignment algorithm.β23Mar 21, 2021Updated 5 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.β63May 30, 2024Updated 2 years ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challeβ¦β17Jul 6, 2026Updated 2 months ago
- PKSmart: Predicting PK properties using Chemical Structuresβ23Sep 26, 2025Updated 11 months ago