ππ Your next-gen single-cell Foundation Model
β38Aug 28, 2026Updated this week
Alternatives and similar repositories for scPRINT-2
Users that are interested in scPRINT-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π The go-to single-cell Foundation Modelβ157Aug 11, 2026Updated 2 weeks ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed singleβ¦β16Dec 8, 2024Updated last year
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biologyβ38Mar 1, 2026Updated 5 months ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasksβ16Nov 5, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcriptsβ11Sep 17, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)β43Sep 3, 2025Updated 11 months ago
- β55Mar 4, 2025Updated last year
- β15Jan 14, 2025Updated last year
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverseβ68Updated this week
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Dataβ36Dec 15, 2025Updated 8 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omicsβ79Updated this week
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.β20Apr 16, 2026Updated 4 months ago
- Interactive spatial transcriptomics viewer for h5ad filesβ16Mar 14, 2026Updated 5 months ago
- β16Aug 1, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- β96Aug 10, 2026Updated 2 weeks ago
- State is a machine learning model that predicts cellular perturbation response across diverse contextsβ651Jul 24, 2026Updated last month
- An interactive tool to explore low dimensional embeddings of omics data.β17Mar 27, 2026Updated 5 months ago
- β26Jul 22, 2026Updated last month
- A modular tool for proportion analysis in single-cell sequencing dataβ29Feb 26, 2026Updated 6 months ago
- A Predictive World Model of the Transcriptomeβ35Oct 18, 2025Updated 10 months ago
- Relief Based Algorithms of ReBATE implemented in Python with Cython optimization. This repository is no longer being updated. Please seeβ¦β32May 22, 2018Updated 8 years ago
- β25Sep 12, 2022Updated 3 years ago
- β118Aug 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DeepTM: A deep learning setup for prediction of transmembrane proteinsβ19Jan 2, 2018Updated 8 years ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopesβ86Jul 10, 2026Updated last month
- β16Dec 18, 2024Updated last year
- Arc Virtual Cell Atlasβ584Updated this week
- Repository for the family history/pedigree projectβ13Updated this week
- β26Aug 8, 2026Updated 3 weeks ago
- Metrics for our protein design competitions.β36Nov 1, 2024Updated last year
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)β14Jun 16, 2021Updated 5 years ago
- β13Mar 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ECCB2021 tutorial: Inside the βBlack Boxβ: Explainable Deep Learning Models For Image and Sequence Classificationβ11Sep 3, 2021Updated 4 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genomeβ26Aug 17, 2024Updated 2 years ago
- Transformer models for predicting gene regulatory networks from omics dataβ22Mar 4, 2026Updated 5 months ago
- Python API and Jupyter widget for Vitessceβ67Aug 10, 2026Updated 2 weeks ago
- The software of Pamona, a partial manifold alignment algorithm.β23Mar 21, 2021Updated 5 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.β63May 30, 2024Updated 2 years ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challeβ¦β17Jul 6, 2026Updated last month