Transformer models for predicting gene regulatory networks from omics data
☆21Mar 4, 2026Updated 4 months ago
Alternatives and similar repositories for GRNformer
Users that are interested in GRNformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆106Mar 16, 2026Updated 4 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆33Aug 20, 2025Updated 11 months ago
- ☆30Sep 9, 2025Updated 10 months ago
- Conditional Monge Gap (2026; Nature Machine Intelligence)☆17Jun 25, 2026Updated 3 weeks ago
- ☆54Apr 7, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Jan 31, 2023Updated 3 years ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆15Sep 23, 2025Updated 9 months ago
- ☆15Dec 19, 2025Updated 7 months ago
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆42Sep 3, 2025Updated 10 months ago
- GeneCompass☆119Feb 10, 2026Updated 5 months ago
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆39May 19, 2026Updated 2 months ago
- ☆16Dec 10, 2025Updated 7 months ago
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆18May 23, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆24May 11, 2025Updated last year
- CONCERT predicts niche-aware perturbation responses in spatial transcriptomics☆24Nov 13, 2025Updated 8 months ago
- ☆28Dec 10, 2025Updated 7 months ago
- ☆16Jul 2, 2026Updated 2 weeks ago
- A human universal senescence index to evaluate celluar senescence☆44Sep 11, 2025Updated 10 months ago
- Official pytorch implementation for paper "Joint Velocity-Growth Flow Matching for Single-Cell Dynamics Modeling" (NeurIPS 2025)☆20Jan 5, 2026Updated 6 months ago
- ☆15Jun 4, 2023Updated 3 years ago
- Heuristic energy-based cyclic peptide design☆15Feb 21, 2025Updated last year
- ☆19Oct 18, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆17Jun 22, 2024Updated 2 years ago
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆38Dec 18, 2025Updated 7 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- XPert: A Knowledge-Informed Dual-Branch Transformer Model for Predicting Drug-Induced Cellular Perturbation Effects☆24Nov 22, 2025Updated 7 months ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- ☆17Jan 30, 2026Updated 5 months ago
- Large language model Mistral for DNA☆24Sep 12, 2025Updated 10 months ago
- Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or tran…☆28Jun 4, 2025Updated last year
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆24Nov 11, 2025Updated 8 months ago
- The fastai book, published as Jupyter Notebooks☆11Jun 7, 2022Updated 4 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 9 months ago
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆26Nov 4, 2025Updated 8 months ago
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆16May 13, 2026Updated 2 months ago
- Walmart Store Sales Forecasting☆10May 6, 2026Updated 2 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago