cBioPortal / cbioportal
cBioPortal for Cancer Genomics
☆771Updated this week
Alternatives and similar repositories for cbioportal:
Users that are interested in cbioportal are comparing it to the libraries listed below
- React Frontend of cBioPortal☆121Updated this week
- A centralized location for storing curated data from cBioPortal☆189Updated 3 weeks ago
- Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects☆135Updated 2 months ago
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆469Updated last month
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆476Updated 3 weeks ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,011Updated last week
- Near-optimal RNA-Seq quantification☆676Updated 2 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆392Updated 10 months ago
- Tools to process and analyze deep sequencing data.☆718Updated this week
- An interactive explorer for single-cell transcriptomics data☆670Updated last week
- web-based analysis tool for rare disease genomics☆187Updated last week
- STAR-Fusion codebase☆240Updated 2 months ago
- A powerful open source data warehouse system☆258Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆350Updated this week
- ENCODE ChIP-seq pipeline☆265Updated last year
- ENCODE ATAC-seq pipeline☆411Updated 9 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆279Updated 9 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆386Updated 4 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆417Updated this week
- A quality control analysis tool for high throughput sequencing data☆500Updated last year
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆671Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆802Updated 9 months ago
- Backend server for Genome Nexus☆41Updated last week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,004Updated 8 months ago
- A tool to find sequencing data and metadata from public databases.☆572Updated 8 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆507Updated 2 months ago
- Java utilities for Bioinformatics☆497Updated this week
- C library for high-throughput sequencing data formats☆845Updated last week
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆310Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆462Updated 2 months ago