cBioPortal / cbioportalLinks
cBioPortal for Cancer Genomics
☆867Updated this week
Alternatives and similar repositories for cbioportal
Users that are interested in cbioportal are comparing it to the libraries listed below
Sorting:
- React Frontend of cBioPortal☆127Updated 2 weeks ago
- Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects☆134Updated 7 months ago
- A centralized location for storing curated data from cBioPortal☆194Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆699Updated this week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,016Updated last year
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆472Updated 2 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆505Updated last week
- bedtools - the swiss army knife for genome arithmetic☆999Updated 6 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆688Updated last week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆834Updated last year
- SRA Tools☆1,261Updated this week
- This is the core repo for OpenELIS global v3☆150Updated this week
- An interactive explorer for single-cell transcriptomics data☆713Updated last week
- A list of useful bioinformatics resources☆616Updated 5 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,360Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆735Updated 2 months ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,028Updated 2 months ago
- Java utilities for Bioinformatics☆512Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆756Updated 2 months ago
- Near-optimal RNA-Seq quantification☆701Updated 5 months ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆318Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆843Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆872Updated 8 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,109Updated 2 weeks ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆485Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆513Updated 3 weeks ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆855Updated 2 weeks ago
- Python library to handle Gene Ontology (GO) terms☆861Updated 3 weeks ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆399Updated 2 months ago
- GTEx & TOPMed data production and analysis pipelines☆383Updated 3 weeks ago