Alternatives and similar repositories for Dynamics

Users that are interested in Dynamics are comparing it to the libraries listed below

• speleo3 / pymol-psico
  Pymol ScrIpt COllection (PSICO)
  ☆60Updated last month
• MooersLab / pymolshortcuts
  The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…
  ☆80Updated last year
• boscoh / pdbremix
  analyse PDB files, run molecular-dynamics & analyse trajectories
  ☆61Updated 7 years ago
• Valdes-Tresanco-MS / AMDock
  (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
  ☆70Updated 2 years ago
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆67Updated 2 months ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆87Updated 4 years ago
• QVina / QVina.github.io
  The code for the QuickVina homepage.
  ☆33Updated 2 years ago
• dwhswenson / contact_map
  Contact map analysis for biomolecules; based on MDTraj
  ☆45Updated 7 months ago
• ADplugin / ADplugin
  Autodock/Vina plugin for PyMol by Daniel Seeliger
  ☆27Updated 7 years ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆30Updated last year
• pstansfeld / MemProtMD
  ☆45Updated 3 months ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆53Updated 11 months ago
• williamdlees / AmberUtils
  Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods
  ☆19Updated 5 years ago
• paiardin / DockingPie
  A Consensus Docking Plugin for PyMOL
  ☆75Updated last year
• zhenglz / dockingML
  A package for MD, Docking and Machine learning drug discovery pipeline
  ☆44Updated 4 years ago
• osita-sunday-nnyigide / Pras_Server
  Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …
  ☆27Updated last year
• bioexcel / biobb
  Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…
  ☆59Updated last week
• schenc3 / InteractiveROSETTA
  A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites
  ☆29Updated 7 years ago
• gerdos / PyRAMA
  Python implementation of the Ramachandran plot
  ☆51Updated 2 weeks ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆124Updated 2 years ago
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆77Updated 3 years ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆34Updated 3 weeks ago
• mmtsb / toolset
  MMTSB Tool Set
  ☆31Updated 2 months ago
• ccsb-scripps / ADCP
  AutoDock CrankPep for peptide and disordered protein docking
  ☆51Updated 4 years ago
• MooersLab / pymolsnips
  Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.
  ☆42Updated last year
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆55Updated last month
• RUBi-ZA / MODE-TASK
  PCA and normal mode analysis of proteins
  ☆17Updated last year
• Hoecker-Lab / protlego
  Automated construction of protein chimeras and their analysis.
  ☆15Updated last year
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆43Updated 5 years ago